View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18822_high_6 (Length: 278)

Name: NF18822_high_6
Description: NF18822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18822_high_6
NF18822_high_6
[»] chr2 (8 HSPs)
chr2 (14-76)||(18061157-18061219)
chr2 (23-74)||(29686170-29686221)
chr2 (21-67)||(5608575-5608621)
chr2 (23-69)||(19865948-19865994)
chr2 (23-69)||(19870849-19870895)
chr2 (23-69)||(19875750-19875796)
chr2 (26-68)||(45040115-45040157)
chr2 (1-69)||(43559680-43559748)
[»] chr5 (3 HSPs)
chr5 (23-74)||(15471109-15471160)
chr5 (23-76)||(35951958-35952011)
chr5 (13-69)||(14144923-14144982)
[»] chr3 (8 HSPs)
chr3 (1-76)||(28521511-28521586)
chr3 (13-66)||(33087906-33087959)
chr3 (13-74)||(46091841-46091902)
chr3 (2-76)||(28050761-28050835)
chr3 (16-74)||(28146822-28146880)
chr3 (23-76)||(26445993-26446046)
chr3 (24-67)||(571019-571062)
chr3 (13-76)||(39650473-39650536)
[»] chr8 (4 HSPs)
chr8 (13-74)||(33828272-33828333)
chr8 (13-72)||(16366826-16366885)
chr8 (26-68)||(25247002-25247044)
chr8 (23-76)||(29191127-29191180)
[»] chr4 (4 HSPs)
chr4 (23-76)||(55250520-55250573)
chr4 (23-76)||(47668937-47668990)
chr4 (23-74)||(29857434-29857485)
chr4 (26-68)||(1101124-1101166)
[»] chr1 (3 HSPs)
chr1 (23-76)||(44508250-44508303)
chr1 (23-68)||(7093599-7093644)
chr1 (23-76)||(15962378-15962431)
[»] chr7 (4 HSPs)
chr7 (13-67)||(27705385-27705439)
chr7 (26-68)||(47235951-47235993)
chr7 (13-74)||(19910165-19910223)
chr7 (21-57)||(34821135-34821171)
[»] scaffold0005 (1 HSPs)
scaffold0005 (13-69)||(270303-270359)
[»] scaffold0406 (1 HSPs)
scaffold0406 (26-68)||(12689-12731)
[»] scaffold0257 (1 HSPs)
scaffold0257 (18-76)||(16487-16545)


Alignment Details
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 18061219 - 18061157
Alignment:
Q  14 tattaaaataatattgataatctatttagtttagtgtccattatggataaatttgaattctta 76  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  18061219 tattaaaataatattaataatctatttagtttagtgtccattatgaataaatttgacttctta 18061157  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 29686221 - 29686170
Alignment:
Q  23 aatattgataatctatttagtttagtgtccattatggataaatttgaattct 74  Q
    ||||||||||||||||||| ||||||||| |||||||||||| |||| ||||    
T  29686221 aatattgataatctatttattttagtgtcaattatggataaaattgacttct 29686170  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 5608575 - 5608621
Alignment:
Q  21 ataatattgataatctatttagtttagtgtccattatggataaattt 67  Q
    |||||||||||||| |||||||||||||||| ||||| |||||||||    
T  5608575 ataatattgataatatatttagtttagtgtcaattatagataaattt 5608621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 19865948 - 19865994
Alignment:
Q  23 aatattgataatctatttagtttagtgtccattatggataaatttga 69  Q
    ||||| |||||||||||||||||||| || ||||| |||||||||||    
T  19865948 aatatagataatctatttagtttagtatcaattatagataaatttga 19865994  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 19870849 - 19870895
Alignment:
Q  23 aatattgataatctatttagtttagtgtccattatggataaatttga 69  Q
    ||||| |||||||||||||||||||| || ||||| |||||||||||    
T  19870849 aatatagataatctatttagtttagtatcaattatagataaatttga 19870895  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 19875750 - 19875796
Alignment:
Q  23 aatattgataatctatttagtttagtgtccattatggataaatttga 69  Q
    ||||| |||||||||||||||||||| || ||||| |||||||||||    
T  19875750 aatatagataatctatttagtttagtatcaattatagataaatttga 19875796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 45040157 - 45040115
Alignment:
Q  26 attgataatctatttagtttagtgtccattatggataaatttg 68  Q
    ||||||||||||||||||||||| || ||||| ||||||||||    
T  45040157 attgataatctatttagtttagtatcaattatagataaatttg 45040115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 43559680 - 43559748
Alignment:
Q  1 taaagagagaccatattaaaataatattgataatctatttagtttagtgtccattatggataaatttga 69  Q
    ||||||||||  || |||||| |||| | |||||||| ||||||||||||| |||||  ||||||||||    
T  43559680 taaagagagattattttaaaaaaatacttataatctacttagtttagtgtcaattataaataaatttga 43559748  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 15471160 - 15471109
Alignment:
Q  23 aatattgataatctatttagtttagtgtccattatggataaatttgaattct 74  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15471160 aatattgataatctatttagtttagtgtcaattatggataaatttgaattct 15471109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 35952011 - 35951958
Alignment:
Q  23 aatattgataatctatttagtttagtgtccattatggataaatttgaattctta 76  Q
    |||||||||||| |||||||||||||||| ||||||||||||||| | ||||||    
T  35952011 aatattgataatatatttagtttagtgtcaattatggataaattttagttctta 35951958  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 14144982 - 14144923
Alignment:
Q  13 atattaaaataatattgataatctatttagtttagtgtc---cattatggataaatttga 69  Q
    |||||| || |||||||||||||||||||||||||||||    |||||||||||||||||    
T  14144982 atattataaaaatattgataatctatttagtttagtgtcaataattatggataaatttga 14144923  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 28521511 - 28521586
Alignment:
Q  1 taaagagagaccatattaaaataatattgataatctatttagtttagtgtccattatggataaatttgaattctta 76  Q
    ||||||||||  |||||| ||||||||||||||||||||||||||||| || |||||| |||||||||| ||||||    
T  28521511 taaagagagataatattataataatattgataatctatttagtttagtatcaattatgaataaatttgacttctta 28521586  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 33087959 - 33087906
Alignment:
Q  13 atattaaaataatattgataatctatttagtttagtgtccattatggataaatt 66  Q
    ||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||    
T  33087959 atattaataaaatattgataatctatttagtttagtgtcaattatagataaatt 33087906  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 46091902 - 46091841
Alignment:
Q  13 atattaaaataatattgataatctatttagtttagtgtccattatggataaatttgaattct 74  Q
    |||||| || ||||||||||||| ||||||||||||||  ||||||||||||||||| ||||    
T  46091902 atattataaaaatattgataatccatttagtttagtgttaattatggataaatttgacttct 46091841  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 28050835 - 28050761
Alignment:
Q  2 aaagagagaccatattaaaataatattgataatctatttagtttagtgtccattatggataaatttgaattctta 76  Q
    |||||||||  ||| ||||| ||||| |||||||||||||||||| |||| ||||| ||||||||| | ||||||    
T  28050835 aaagagagatgataataaaaaaatatggataatctatttagtttaatgtctattatagataaatttaatttctta 28050761  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 28146880 - 28146822
Alignment:
Q  16 ttaaaataatattgataatctatttagtttagtgtccattatggataaatttgaattct 74  Q
    |||||| |||||||||| |||| ||||||||||||| ||||||||||| ||||| ||||    
T  28146880 ttaaaaaaatattgatattctaattagtttagtgtcaattatggataactttgacttct 28146822  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 26445993 - 26446046
Alignment:
Q  23 aatattgataatctatttagtttagtgtccattatggataaatttgaattctta 76  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||| | ||||||    
T  26445993 aatattgataatatatttagtttggtgtcaattatggataaatttaagttctta 26446046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 571019 - 571062
Alignment:
Q  24 atattgataatctatttagtttagtgtccattatggataaattt 67  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||    
T  571019 atattgataatatatttagtctagtgtcaattatggataaattt 571062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 39650473 - 39650536
Alignment:
Q  13 atattaaaataatattgataatctatttagtttagtgtccattatggataaatttgaattctta 76  Q
    ||||||| | ||||||||||||||||||| ||||| ||| ||||| ||| ||||||| ||||||    
T  39650473 atattaataaaatattgataatctatttaatttagcgtcaattatagatgaatttgacttctta 39650536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 33828272 - 33828333
Alignment:
Q  13 atattaaaataatattgataatctatttagtttagtgtccattatggataaatttgaattct 74  Q
    |||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  33828272 atattataaaaatattgataatctatttagtttagtgtcaattatggataaatttgacttct 33828333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 16366885 - 16366826
Alignment:
Q  13 atattaaaataatattgataatctatttagtttagtgtccattatggataaatttgaatt 72  Q
    |||||| || ||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  16366885 atattataaaaatattgataatctatttagtttagtgttaattatagataaatttgaatt 16366826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 25247044 - 25247002
Alignment:
Q  26 attgataatctatttagtttagtgtccattatggataaatttg 68  Q
    ||||||||| |||||||||||||||| ||||| ||||||||||    
T  25247044 attgataatatatttagtttagtgtcaattatagataaatttg 25247002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 29191180 - 29191127
Alignment:
Q  23 aatattgataatctatttagtttagtgtccattatggataaatttgaattctta 76  Q
    |||||||||| | |||||||||| ||||| ||||||||||||||| | ||||||    
T  29191180 aatattgatagtatatttagtttggtgtcaattatggataaatttaagttctta 29191127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 55250520 - 55250573
Alignment:
Q  23 aatattgataatctatttagtttagtgtccattatggataaatttgaattctta 76  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||    
T  55250520 aatattgataatctatttagtttagtgtcaattatagataaatttgacttctta 55250573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 47668990 - 47668937
Alignment:
Q  23 aatattgataatctatttagtttagtgtccattatggataaatttgaattctta 76  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||    
T  47668990 aatattgataatctatttaatttagtgtcaattatagataaatttgatttctta 47668937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 29857485 - 29857434
Alignment:
Q  23 aatattgataatctatttagtttagtgtccattatggataaatttgaattct 74  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||| ||||    
T  29857485 aatattgataatctatttagtttagtgttaattatggataaaattgacttct 29857434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 1101166 - 1101124
Alignment:
Q  26 attgataatctatttagtttagtgtccattatggataaatttg 68  Q
    |||||||||||||||||||||||||| | ||| ||||||||||    
T  1101166 attgataatctatttagtttagtgtcaactatagataaatttg 1101124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 44508303 - 44508250
Alignment:
Q  23 aatattgataatctatttagtttagtgtccattatggataaatttgaattctta 76  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||    
T  44508303 aatattgataatctatttaatttagtgtcaattatagataaatttgacttctta 44508250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 7093599 - 7093644
Alignment:
Q  23 aatattgataatctatttagtttagtgtccattatggataaatttg 68  Q
    |||| |||||||||||||||||||||||| ||||| ||||||||||    
T  7093599 aataatgataatctatttagtttagtgtcaattattgataaatttg 7093644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 15962378 - 15962431
Alignment:
Q  23 aatattgataatctatttagtttagtgtccattatggataaatttgaattctta 76  Q
    |||||| ||||| |||||||||||||||| |||||||||| |||| | ||||||    
T  15962378 aatattcataatatatttagtttagtgtcaattatggatacatttaagttctta 15962431  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 27705439 - 27705385
Alignment:
Q  13 atattaaaataatattgataatctatttagtttagtgtccattatggataaattt 67  Q
    ||||||||| |||||||||||||||||||| || || || |||||||||||||||    
T  27705439 atattaaaaaaatattgataatctatttagcttggtatcaattatggataaattt 27705385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 47235951 - 47235993
Alignment:
Q  26 attgataatctatttagtttagtgtccattatggataaatttg 68  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  47235951 attgataatctatttagtttagtgtcaattatagataaatttg 47235993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 19910165 - 19910223
Alignment:
Q  13 atattaaaataatattgataatctatttagtttagtgtccattatggataaatttgaattct 74  Q
    |||||| || |||||||||||||||||| |||||||||   |||||||||||||||| ||||    
T  19910165 atattataaaaatattgataatctattttgtttagtgt---ttatggataaatttgacttct 19910223  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 34821171 - 34821135
Alignment:
Q  21 ataatattgataatctatttagtttagtgtccattat 57  Q
    |||||||||||||||||||||||| |||||| |||||    
T  34821171 ataatattgataatctatttagttaagtgtcaattat 34821135  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 270303 - 270359
Alignment:
Q  13 atattaaaataatattgataatctatttagtttagtgtccattatggataaatttga 69  Q
    |||||| || ||||||||||||||| ||||||||||||| |||||  ||||||||||    
T  270303 atattataaaaatattgataatctacttagtttagtgtcaattataaataaatttga 270359  T

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Target: scaffold0406 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 12731 - 12689
Alignment:
Q  26 attgataatctatttagtttagtgtccattatggataaatttg 68  Q
    ||||||| |||||||||||||||||| | ||||||||||||||    
T  12731 attgatattctatttagtttagtgtcaagtatggataaatttg 12689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 16545 - 16487
Alignment:
Q  18 aaaataatattgataatctatttagtttagtgtccattatggataaatttgaattctta 76  Q
    |||| |||||||||||| ||||||||||||| || ||| ||||||||| ||| ||||||    
T  16545 aaaaaaatattgataatttatttagtttagtatcaattgtggataaatctgacttctta 16487  T

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