View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18822_high_8 (Length: 236)
Name: NF18822_high_8
Description: NF18822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18822_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 5 - 183
Target Start/End: Complemental strand, 13029984 - 13029806
Alignment:
| Q |
5 |
atcttatcttaatcttaatcatatagaagtagagttcacaaaaatccaatctcaatctttccttaatctaattacatgcaaatcgagctcacactaaaaa |
104 |
Q |
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| T |
13029984 |
atcttatcttaatcttaatcatgtagaagtagagctcacaaaaatccaatctcaatcttttcttaatctaattacatgcaaatcgagctcacactaaaaa |
13029885 |
T |
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| Q |
105 |
ctgttactatcatcacaattttttgacagaaattatatcttattcttatacaatcgagctaaaataataaaatcttaag |
183 |
Q |
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| T |
13029884 |
ctgttactatcatcacaattttttgacataaattatatcttattcttatacaatcgagctaaaataataaaatcttaag |
13029806 |
T |
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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 7420246 - 7420335
Alignment:
| Q |
16 |
atcttaatcatatagaagtagagttcacaaaaatccaatctcaatctttccttaatctaattacatgcaaatcgagctcacactaaaaac |
105 |
Q |
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| T |
7420246 |
atcttgatcatatacaattagagctcgcaaaaatcaaatctcaatcttatcttaatttaattacatacaaatcgagctcacactaaaaac |
7420335 |
T |
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