View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18822_high_9 (Length: 229)

Name: NF18822_high_9
Description: NF18822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18822_high_9
NF18822_high_9
[»] chr4 (2 HSPs)
chr4 (32-207)||(13030140-13030314)
chr4 (136-190)||(5943353-5943407)
[»] chr5 (2 HSPs)
chr5 (136-205)||(17764943-17765012)
chr5 (136-186)||(16987839-16987889)
[»] chr1 (3 HSPs)
chr1 (143-206)||(33012788-33012851)
chr1 (138-187)||(17122858-17122907)
chr1 (136-201)||(24230208-24230273)
[»] chr6 (1 HSPs)
chr6 (133-201)||(30884424-30884492)
[»] chr3 (1 HSPs)
chr3 (137-201)||(19185104-19185168)
[»] chr2 (1 HSPs)
chr2 (136-190)||(3914242-3914296)
[»] scaffold0416 (1 HSPs)
scaffold0416 (136-180)||(14837-14881)


Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 32 - 207
Target Start/End: Complemental strand, 13030314 - 13030140
Alignment:
Q  32 gtttgttttatcttaatttaaatcatatcttgatcttaataactgccaaacagatatcttaatcttattttaattataataaatatacaaattgaaccca 131  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13030314 gtttgttttatcttaatttaaatcatatcttgatcttaattactgccaaatagatatcttaatcttattttaattataataaatatacaaattgaaccca 13030215  T
Q  132 ctttatcgggatgccaacctaaatgggatgtcgttacttctccttgatgtatgtcctcttttctggtttagcgagg 207  Q
     |  |  | | ||||||||||  | ||||||||||||||||||||||||  |||||||| | ||||||||||||||    
T  13030214 ttccaatgag-tgccaacctagttaggatgtcgttacttctccttgatgcctgtcctctctcctggtttagcgagg 13030140  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 5943353 - 5943407
Alignment:
Q  136 atcgggatgccaacctaaatgggatgtcgttacttctccttgatgtatgtcctct 190  Q
    |||||| ||||||||||| ||  |||||||| |||||||||||||| ||||||||    
T  5943353 atcggggtgccaacctaattgaaatgtcgttgcttctccttgatgtctgtcctct 5943407  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 17764943 - 17765012
Alignment:
Q  136 atcgggatgccaacctaaatgggatgtcgttacttctccttgatgtatgtcctcttttctggtttagcga 205  Q
    |||||| |||||| |||| |||||||||||| |||||||||||||| |||| ||| | ||||||||||||    
T  17764943 atcggggtgccaatctaattgggatgtcgttgcttctccttgatgtctgtcatctctcctggtttagcga 17765012  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 16987839 - 16987889
Alignment:
Q  136 atcgggatgccaacctaaatgggatgtcgttacttctccttgatgtatgtc 186  Q
    |||||| ||||||||||  |||||||||||| |||||||||||||| ||||    
T  16987839 atcggggtgccaacctagttgggatgtcgttgcttctccttgatgtctgtc 16987889  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 33012788 - 33012851
Alignment:
Q  143 tgccaacctaaatgggatgtcgttacttctccttgatgtatgtcctcttttctggtttagcgag 206  Q
    ||||||||||  |||||||||||| |||||||||||||| |||||||| | ||| |||||||||    
T  33012788 tgccaacctagttgggatgtcgttgcttctccttgatgtttgtcctctctcctgatttagcgag 33012851  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 17122858 - 17122907
Alignment:
Q  138 cgggatgccaacctaaatgggatgtcgttacttctccttgatgtatgtcc 187  Q
    |||| ||||||||||  |||||||||||| |||||||||||||| |||||    
T  17122858 cggggtgccaacctagttgggatgtcgttgcttctccttgatgtctgtcc 17122907  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 24230208 - 24230273
Alignment:
Q  136 atcgggatgccaacctaaatgggatgtcgttacttctccttgatgtatgtcctcttttctggttta 201  Q
    |||||| || |||||||  |||||||||||| |||||||||||||  |||||||| | ||||||||    
T  24230208 atcggggtgtcaacctagttgggatgtcgttgcttctccttgatgcctgtcctctctcctggttta 24230273  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 30884424 - 30884492
Alignment:
Q  133 tttatcgggatgccaacctaaatgggatgtcgttacttctccttgatgtatgtcctcttttctggttta 201  Q
    ||||||||| || |||||||  ||||||||||||  |||||||||||| ||||||||| | ||||||||    
T  30884424 tttatcggggtgtcaacctagttgggatgtcgttgattctccttgatgcatgtcctctctcctggttta 30884492  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 19185104 - 19185168
Alignment:
Q  137 tcgggatgccaacctaaatgggatgtcgttacttctccttgatgtatgtcctcttttctggttta 201  Q
    ||||| ||||||||||  |||||||||||| |||||||||||||  |||||||| | ||||||||    
T  19185104 tcggggtgccaacctagttgggatgtcgttgcttctccttgatgcctgtcctctctcctggttta 19185168  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 3914296 - 3914242
Alignment:
Q  136 atcgggatgccaacctaaatgggatgtcgttacttctccttgatgtatgtcctct 190  Q
    |||||| ||||||||||  |||||||||||| |||||||||||||| || |||||    
T  3914296 atcggggtgccaacctagttgggatgtcgttgcttctccttgatgtctgccctct 3914242  T

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Target: scaffold0416 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 14837 - 14881
Alignment:
Q  136 atcgggatgccaacctaaatgggatgtcgttacttctccttgatg 180  Q
    |||||| ||||||||||  |||||||||||| |||||||||||||    
T  14837 atcggggtgccaacctagttgggatgtcgttgcttctccttgatg 14881  T

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