View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18822_low_4 (Length: 290)
Name: NF18822_low_4
Description: NF18822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18822_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 9395952 - 9396219
Alignment:
| Q |
1 |
tgatgaggtagctaatggcatcaacgttggtgtgggaaccgaatagttggcaggagagttgtccaaactttacgggtaaatagtgtttttgatagtaatt |
100 |
Q |
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| T |
9395952 |
tgatgaggtagctaatggcatcaacgttggtgtgggaaccgaatagttggcaggagagttgtccaaactttacgggtaaatagtgtttttgatagtaatt |
9396051 |
T |
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| Q |
101 |
tgggatagaagatcgccaccaagaacagacggaacgagagcgaatgaggtaaagttccctgttaagtttttgtgatattaattgcagaagctcacgtgga |
200 |
Q |
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| T |
9396052 |
tgggatagaagatcgccaccaagaacagacggaacgagagcgaatgaggtaaagttccctgttaagtttttgtgatattagttgcagaagctcacgtgga |
9396151 |
T |
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| Q |
201 |
agctgagaccaatctgctgccatggatcgtagtggtaaggtttgtggtgctcgccgttagggttttat |
268 |
Q |
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| T |
9396152 |
agctgagaccaatctgctgccatggatcgtagtggtaaggtttgtggtgctcgccgttagggttttat |
9396219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 9687528 - 9687635
Alignment:
| Q |
123 |
gaacagacggaacgagagcgaatgaggtaaagttccctgtta---agtttttgtgatattaattgcagaagctcacgtggaagctgagaccaatctgctg |
219 |
Q |
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| T |
9687528 |
gaacagacggaacgaaagcgaagaagatagagttcactgttgtcgagtttttgtgatattagttgcagaagttctctcggaagctgagaccaatctgctt |
9687627 |
T |
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| Q |
220 |
ccatggat |
227 |
Q |
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| T |
9687628 |
ccatggat |
9687635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 2606124 - 2605917
Alignment:
| Q |
19 |
catcaacgttggtgtgggaaccgaatagttggcaggagagttgtccaaactttacgggtaaatagtgtttttgatagtaatttgggatagaagatcgcca |
118 |
Q |
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|||||| ||||| |||||||| ||||||||||| |||| |||||||||||||||||||| ||||| ||||| ||||| |||| || ||||||||||| |
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| T |
2606124 |
catcaatgttggggtgggaacgaaatagttggcaagagaattgtccaaactttacgggtatatagttttttttatagtcgtttga-atggaagatcgcca |
2606026 |
T |
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| Q |
119 |
ccaagaacagacggaacgagagcgaatgaggtaaagttccctgttaagtttttgtgatattaattgcagaagctcacgtggaagctgagaccaatctgct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |||||||||||||||| |||||| |
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| T |
2606025 |
ccaagaacagacggaacgagagcgaatgaggtaaagttccctgttgagtttttgtgatattagttgcagaaactcatgtggaagctgagaccattctgct |
2605926 |
T |
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| Q |
219 |
gccatggat |
227 |
Q |
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|||||||| |
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| T |
2605925 |
accatggat |
2605917 |
T |
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