View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18822_low_5 (Length: 287)
Name: NF18822_low_5
Description: NF18822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18822_low_5 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 40030370 - 40030111
Alignment:
| Q |
16 |
atctatatgagttgcaccatcatttaaatgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactc |
115 |
Q |
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| T |
40030370 |
atctatatcagttgcaccatcatttaagtgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactc |
40030271 |
T |
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| Q |
116 |
ttttgatcctacacacattcaaaacttaaggaattcaggttgattcagtaacacaaacataatcattaacagaaaacacatcttagaaacaaatatgtac |
215 |
Q |
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| T |
40030270 |
ttttgatcctacacacattcaaaacttaaggaattcaggttgattcagtaacacaaacat-------------aaacacatcttagaaacaaatat---- |
40030188 |
T |
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| Q |
216 |
ctagtacctaccaaattatcca--------taaggtcgattcagtaatctgtgtagaaaatttaccttatagattgataa |
287 |
Q |
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| T |
40030187 |
---gtatctaccaaattatccataatcttctaaggtcgattcagtaatctgtgtagaaaatttaccttatagattgataa |
40030111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 30925633 - 30925738
Alignment:
| Q |
25 |
agttgcaccatcatttaaatgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcc |
124 |
Q |
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| T |
30925633 |
agttgcactatcctttaagcttgtgaacaaagaggatggccaatatccaattatgtttccagatccatattcaagccaccaattcccagttttttgatcc |
30925732 |
T |
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| Q |
125 |
tacaca |
130 |
Q |
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| T |
30925733 |
tgcaca |
30925738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 30916500 - 30916605
Alignment:
| Q |
25 |
agttgcaccatcatttaaatgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcc |
124 |
Q |
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| T |
30916500 |
agttgcactatcctttaagcttgtgaacaaagaggatggccaatatccaattatgtttccagatccatattcaagccaccaattcccattttttctatcc |
30916599 |
T |
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| Q |
125 |
tacaca |
130 |
Q |
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|||||| |
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| T |
30916600 |
tacaca |
30916605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 30905797 - 30905884
Alignment:
| Q |
25 |
agttgcaccatcatttaaatgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattccca |
112 |
Q |
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| T |
30905797 |
agttgcactatcctttaaacttgtgaacaaagaggatggccaatatccaattatgtttccagatccaaattcaagccaccaattccca |
30905884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 29211246 - 29211350
Alignment:
| Q |
25 |
agttgcaccatcatttaaatgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcc |
124 |
Q |
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| T |
29211246 |
agttgcactgtcctttaagtgtgtgaatagggaggatggccaatatccaattaagtttccagatccatattcaagccaccaattcccatgctttggatcc |
29211345 |
T |
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| Q |
125 |
tacac |
129 |
Q |
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||||| |
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| T |
29211346 |
tacac |
29211350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 29312622 - 29312538
Alignment:
| Q |
46 |
tgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcctacaca |
130 |
Q |
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| T |
29312622 |
tgtgaacaaggtggctggccaatagccaagaaaatttccagatccatattcaagccaccaattcccactatttggatcctacaca |
29312538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 29255424 - 29255319
Alignment:
| Q |
25 |
agttgcaccatcatttaaatgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcc |
124 |
Q |
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| T |
29255424 |
agttgcattatcttttaagtttgtgaacaaagaggatggccagtatccaatagggtttccaagtccatattcaagccaccaattcccattccttggatcc |
29255325 |
T |
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| Q |
125 |
tacaca |
130 |
Q |
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|||||| |
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| T |
29255324 |
tacaca |
29255319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 29248776 - 29248692
Alignment:
| Q |
46 |
tgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcctacaca |
130 |
Q |
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| T |
29248776 |
tgtgaacaaagaggatggccagtatccaatagggtttccaagtccatattcaagccaccaactcccattcgttggatcctacaca |
29248692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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