View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18823_low_10 (Length: 377)
Name: NF18823_low_10
Description: NF18823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18823_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 6e-90; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 8 - 367
Target Start/End: Complemental strand, 17075755 - 17075396
Alignment:
| Q |
8 |
gacatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctc |
107 |
Q |
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| T |
17075755 |
gacatcatcaaacacaaccttctcatttccatgcactgccacccaattaacccaatcattgttaacggaccccgatgacgaactaccatccgaagctccc |
17075656 |
T |
|
| Q |
108 |
gaagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgg |
207 |
Q |
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||||||||| | | |||||||||||||| || ||||| ||||||||||||||| ||||||||||||| ||||| ||||| | || || |||||||| | |
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| T |
17075655 |
gaagaaaccacttttaccgcctttttaaggcgttccgagccttgtaattttctcaatttagattttaagatgtgtaaaactgaggaacgatctttgctag |
17075556 |
T |
|
| Q |
208 |
gcaaccgcgccaccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccg |
307 |
Q |
| |
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||| |||||||||||| |||| ||||| ||||| || ||||||||||| ||||||||||||| ||| |||| || | |||||||| |||| ||||| |
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| T |
17075555 |
gcagccgcgccacctttttcagactaatcaccgagtgtcgcaaaattccgttcactttcttccgcttgttaacgatggtactggattgtgcaatgggccg |
17075456 |
T |
|
| Q |
308 |
caccactttcttaaccttctttcttgtcgaagaaataacaccagcgactccatgatgatg |
367 |
Q |
| |
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||||||||||||||||||||| |||| ||||||||||||||||||| | |||| |||||| |
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| T |
17075455 |
caccactttcttaaccttcttccttgccgaagaaataacaccagcgtcaccattatgatg |
17075396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 135 - 367
Target Start/End: Complemental strand, 11053702 - 11053470
Alignment:
| Q |
135 |
agacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgccaccttcttcaaactaa |
234 |
Q |
| |
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||||| || |||||||||||||| ||||||||||||||||| || || |||| || || ||| |||||||| ||||||||||||||||| |||||||||| |
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| T |
11053702 |
agacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaatggtggaccgatctttgctaggcaaccgcgccacctttttcaaactaa |
11053603 |
T |
|
| Q |
235 |
ataccgaatgccgcaaaattccattcactttcttcctctttataactattga-actggatttagcaaaaggccgcaccactttcttaaccttctttcttg |
333 |
Q |
| |
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||||| ||||||| || |||||||||||||||| || | | | || || ||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
11053602 |
tcaccgagtgccgcagaaccccattcactttcttccgattgtttgc-acagataccggattgggcaataggccgcaccactttcttaaccttctttcttg |
11053504 |
T |
|
| Q |
334 |
tcgaagaaataacaccagcgactccatgatgatg |
367 |
Q |
| |
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||| ||||||||||||||| | ||||||||||| |
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| T |
11053503 |
ccgatgaaataacaccagcgtcaccatgatgatg |
11053470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 11064166 - 11064036
Alignment:
| Q |
9 |
acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg |
108 |
Q |
| |
|
|||||||||| ||| || ||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || || |||||| || |
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| T |
11064166 |
acatcatcaaccactactttctcattctcatgcactgccacccaattgacccaatcattattaaccgatcccgacgaggaactaccttccgaaacttccg |
11064067 |
T |
|
| Q |
109 |
aagaaaccgccctaaccgcctttttaagacg |
139 |
Q |
| |
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| |||||| || ||||| ||||||||||||| |
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| T |
11064066 |
aggaaaccaccttaaccacctttttaagacg |
11064036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 9 - 367
Target Start/End: Original strand, 17683905 - 17684263
Alignment:
| Q |
9 |
acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg |
108 |
Q |
| |
|
|||||||||| | | || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || || ||||||| || |
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| T |
17683905 |
acatcatcaaccgctactttctcattcccatgcactgccacccaattaacccaatcattattaaccgacctcgacgaggaactaccttccgaaactcccg |
17684004 |
T |
|
| Q |
109 |
aagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctggg |
208 |
Q |
| |
|
| |||||| || | ||| ||||||||||||| || |||||||||||||| ||||||||||||||||| || || ||||||| || ||| |||||||| || |
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| T |
17684005 |
aggaaaccacctttaccacctttttaagacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaacggtggaccgatctttgctagg |
17684104 |
T |
|
| Q |
209 |
caaccgcgccaccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcc---tcttt--ataactattgaactggatttagcaaaag |
303 |
Q |
| |
|
|||| |||||||||| |||||||||| ||||| |||||||||| |||||||||||||||| | ||| | || ||| | | |||| || || |
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| T |
17684105 |
caactgcgccacctttttcaaactaatcaccgagtgccgcaaaaccccattcactttcttccgtttgtttgcacaaatatcggattgga-----aaatag |
17684199 |
T |
|
| Q |
304 |
gccgcaccactttcttaaccttctttcttgtcgaagaaataacaccagcgactccatgatgatg |
367 |
Q |
| |
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|||||||||||||| | ||||||||||||| ||| ||||||||||||||| | ||||||||||| |
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| T |
17684200 |
gccgcaccactttcctgaccttctttcttgccgatgaaataacaccagcgtcaccatgatgatg |
17684263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 36159902 - 36160065
Alignment:
| Q |
24 |
accttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaa |
123 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||| |||||||| || | || || ||||| ||||||| ||| |||||| || || | | |
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| T |
36159902 |
accttctcattcccatgcacaaccacaaaattaacccaatcgttgttaactgaacatgaagaagaacttttatctgaagctcccgaagaccccaccttca |
36160001 |
T |
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| Q |
124 |
ccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaac |
187 |
Q |
| |
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| T |
36160002 |
ccgcctttttcagacgatccgacccatgtaattttctagctttagattttagaatgtgcaaaac |
36160065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 10560002 - 10559739
Alignment:
| Q |
11 |
atcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaa |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| || ||||| ||||||||| ||| |||| |
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| T |
10560002 |
atcatcaactacaaccttctcattcccatgcactgccacccaattaacccaatcattgttatctgaacccgaggaagaactaccatctgaagctcccgaa |
10559903 |
T |
|
| Q |
111 |
gaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggca |
210 |
Q |
| |
|
|||||| || | ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| ||||||| || | |||||||| |||| |
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|
| T |
10559902 |
gaaaccacctttaccgcctttttgagacgatctgatccttgtaattttctcgatttagattttaagatgtgtaaaacggtggattgatctttgctaggca |
10559803 |
T |
|
| Q |
211 |
accgcgccaccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctt |
274 |
Q |
| |
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| || ||||||| |||||||||| ||||| ||||||| || |||||||||||||||||||| |
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|
| T |
10559802 |
gctgccccacctttttcaaactaatcaccgagtgccgcagaaacccattcactttcttcctctt |
10559739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 297 - 368
Target Start/End: Complemental strand, 10558490 - 10558419
Alignment:
| Q |
297 |
gcaaaaggccgcaccactttcttaaccttctttcttgtcgaagaaataacaccagcgactccatgatgatgt |
368 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||| |
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|
| T |
10558490 |
gcaataggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcgtcaccatgatgatgt |
10558419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 9 - 367
Target Start/End: Original strand, 26741535 - 26741893
Alignment:
| Q |
9 |
acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg |
108 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||| || ||||| ||||| ||| ||| || |
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|
| T |
26741535 |
acatcatcaaccacaaccttctcattcccatgcacttccacccaattaacccaatcgttgttaactgaacccgaggaagaactaccatccgaagctcccg |
26741634 |
T |
|
| Q |
109 |
aagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctggg |
208 |
Q |
| |
|
|||||||| |||| || ||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| | || || ||||||| ||| |
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|
| T |
26741635 |
aagaaaccacccttacagccttcttaagacgatccgatccttgtaattttctcgacttagattttaagatgtgtaaaactgtggaacgatctttgcaggg |
26741734 |
T |
|
| Q |
209 |
caaccgcgccaccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccgc |
308 |
Q |
| |
|
|| ||| ||||||| |||||||||| |||| | ||| || || ||||||||||||||| ||| |||| | | || |||| ||||| |||| || |
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|
| T |
26741735 |
cagccgatccacctttttcaaactaatcaccgggttccgtaagatctcattcactttcttccgcttgttaacaaaggtacatgattgagcaataggctgc |
26741834 |
T |
|
| Q |
309 |
accactttcttaaccttctttcttgtcgaagaaataacaccagcgactccatgatgatg |
367 |
Q |
| |
|
||||| ||||||||||||| || | ||| |||||||||||||| | ||||||||||| |
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|
| T |
26741835 |
gccactctcttaaccttcttcctagccgatgaaataacaccagcatcaccatgatgatg |
26741893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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