View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18823_low_11 (Length: 350)
Name: NF18823_low_11
Description: NF18823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18823_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 46303425 - 46303746
Alignment:
| Q |
19 |
ctatatccatcacttgtcttactctctcattaccaacaattttttgtatttgttaatctctaatgnnnnnnncatattaatgaaggaatttgtcaagctt |
118 |
Q |
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| T |
46303425 |
ctatatccatcacttgtcttactctctcattaccaacaattttttgtatttgttaatctctaatgtttttttcatattaatgaaggaatttgtcaagctt |
46303524 |
T |
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| Q |
119 |
gaaccttggtggtgagatatcaccagcaattggtgatttaagaaacttgcaatccatgtatgtcacctcttacttaacattctatgcatctctcataatt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46303525 |
gaaccttggtggtgagatatcaccagcaattggtgatttaagaaacttgcaatccatgtatgtcacctcttacttaacattctatgcatctctcatactt |
46303624 |
T |
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| Q |
219 |
tagattgaagtcgtgttcactgctcgaaataacactgacccatgtcgttacatttaattgaatactttcatattctaaaaatttacttgtgtcgatgtgt |
318 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46303625 |
tagattgaagtcgtgttcactgcttgaaataacactgacccatgtcgttacatttaattgaatactttcatattctaaaaatttacttgtgtcgatgtgt |
46303724 |
T |
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| Q |
319 |
tagtgtctcgtttgtgcctttg |
340 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
46303725 |
tagtgtctcgtttgtgtctttg |
46303746 |
T |
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