View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18823_low_12 (Length: 333)

Name: NF18823_low_12
Description: NF18823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18823_low_12
NF18823_low_12
[»] chr8 (18 HSPs)
chr8 (7-223)||(42234631-42234847)
chr8 (7-201)||(33071922-33072116)
chr8 (7-198)||(28644566-28644757)
chr8 (7-198)||(30410291-30410482)
chr8 (10-156)||(43807485-43807633)
chr8 (10-156)||(43812044-43812192)
chr8 (7-156)||(197684-197837)
chr8 (7-156)||(202202-202355)
chr8 (7-156)||(312521-312674)
chr8 (7-156)||(317039-317192)
chr8 (7-198)||(38757007-38757186)
chr8 (55-198)||(30405782-30405925)
chr8 (7-99)||(41945343-41945434)
chr8 (7-103)||(41949806-41949902)
chr8 (127-181)||(27435169-27435223)
chr8 (7-45)||(30405918-30405956)
chr8 (280-317)||(42234537-42234574)
chr8 (127-178)||(1286743-1286794)
[»] chr4 (18 HSPs)
chr4 (7-205)||(10317018-10317216)
chr4 (7-200)||(8892580-8892774)
chr4 (7-198)||(31670094-31670286)
chr4 (7-200)||(53722011-53722204)
chr4 (7-201)||(27186146-27186344)
chr4 (10-205)||(43683629-43683813)
chr4 (7-156)||(3770846-3770999)
chr4 (7-156)||(44147027-44147180)
chr4 (7-156)||(44151562-44151715)
chr4 (7-201)||(50627901-50628083)
chr4 (99-204)||(35842843-35842948)
chr4 (8-161)||(41884930-41885081)
chr4 (7-181)||(31359155-31359329)
chr4 (7-181)||(49274491-49274664)
chr4 (7-98)||(31354682-31354772)
chr4 (51-161)||(45976167-45976277)
chr4 (30-80)||(35842797-35842847)
chr4 (37-181)||(53785880-53786024)
[»] chr3 (16 HSPs)
chr3 (7-200)||(9105279-9105472)
chr3 (7-204)||(11004359-11004556)
chr3 (10-201)||(43547730-43547923)
chr3 (7-201)||(9697590-9697786)
chr3 (13-198)||(21847120-21847306)
chr3 (13-198)||(21850210-21850396)
chr3 (7-156)||(54171924-54172077)
chr3 (7-156)||(54167344-54167497)
chr3 (79-198)||(43554645-43554764)
chr3 (7-181)||(39399101-39399275)
chr3 (64-223)||(755891-756049)
chr3 (7-80)||(43554296-43554371)
chr3 (54-161)||(38175785-38175891)
chr3 (280-317)||(43548001-43548038)
chr3 (280-317)||(43554846-43554883)
chr3 (73-105)||(755824-755856)
[»] chr6 (14 HSPs)
chr6 (7-198)||(17096236-17096427)
chr6 (7-205)||(17895678-17895877)
chr6 (7-198)||(27552072-27552263)
chr6 (7-197)||(8315466-8315657)
chr6 (7-201)||(14531746-14531941)
chr6 (7-197)||(8320005-8320195)
chr6 (7-199)||(17779918-17780111)
chr6 (7-205)||(17886803-17886996)
chr6 (7-190)||(27574708-27574880)
chr6 (16-105)||(17159610-17159700)
chr6 (51-105)||(17163676-17163730)
chr6 (15-105)||(7888213-7888305)
chr6 (41-181)||(6440839-6440979)
chr6 (51-103)||(21417159-21417210)
[»] chr1 (7 HSPs)
chr1 (7-204)||(43591777-43591974)
chr1 (7-198)||(16588440-16588631)
chr1 (7-197)||(39793835-39794025)
chr1 (7-198)||(26311526-26311705)
chr1 (7-198)||(26316017-26316196)
chr1 (7-181)||(10504440-10504614)
chr1 (127-178)||(41879945-41879996)
[»] chr5 (21 HSPs)
chr5 (7-201)||(32485944-32486139)
chr5 (7-199)||(30695297-30695489)
chr5 (7-223)||(26336743-26336960)
chr5 (7-205)||(19502311-19502511)
chr5 (7-204)||(36632318-36632503)
chr5 (23-177)||(43384972-43385126)
chr5 (7-156)||(7099374-7099527)
chr5 (7-156)||(7103943-7104096)
chr5 (7-156)||(12018735-12018888)
chr5 (7-156)||(12023293-12023446)
chr5 (54-181)||(20830307-20830434)
chr5 (7-156)||(16794112-16794265)
chr5 (7-156)||(16798673-16798826)
chr5 (7-145)||(40371750-40371888)
chr5 (7-202)||(40367569-40367753)
chr5 (7-181)||(10274550-10274724)
chr5 (7-156)||(37682040-37682182)
chr5 (7-181)||(10277208-10277382)
chr5 (7-156)||(37658736-37658878)
chr5 (54-125)||(20808675-20808746)
chr5 (127-178)||(5733082-5733133)
[»] chr2 (12 HSPs)
chr2 (7-198)||(12999426-12999618)
chr2 (7-197)||(8055396-8055586)
chr2 (7-197)||(8050843-8051033)
chr2 (7-156)||(36670507-36670660)
chr2 (7-156)||(36675055-36675208)
chr2 (7-198)||(6463400-6463579)
chr2 (7-165)||(13270980-13271127)
chr2 (7-181)||(35950417-35950591)
chr2 (8-156)||(41093829-41093976)
chr2 (16-161)||(29767953-29768099)
chr2 (68-156)||(34590280-34590366)
chr2 (60-94)||(27403696-27403730)
[»] chr7 (11 HSPs)
chr7 (9-199)||(47419539-47419729)
chr7 (7-198)||(22901158-22901351)
chr7 (7-198)||(27761401-27761592)
chr7 (7-204)||(35705638-35705836)
chr7 (7-198)||(27756850-27757041)
chr7 (7-204)||(7466479-7466665)
chr7 (16-219)||(733609-733811)
chr7 (7-156)||(7940083-7940236)
chr7 (7-156)||(7944636-7944789)
chr7 (54-175)||(13828087-13828208)
chr7 (16-151)||(8674977-8675113)
[»] scaffold0440 (2 HSPs)
scaffold0440 (7-156)||(7510-7662)
scaffold0440 (7-156)||(2984-3137)
[»] scaffold0044 (2 HSPs)
scaffold0044 (7-156)||(44865-45018)
scaffold0044 (7-156)||(49445-49598)
[»] scaffold0006 (1 HSPs)
scaffold0006 (7-105)||(60201-60300)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 42234847 - 42234631
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42234847 agtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagag 42234748  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcataagat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||    
T  42234747 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataaactaccttctttgtatattttcataagat 42234648  T
Q  207 ttcaataatacaattac 223  Q
    |||||||||||||||||    
T  42234647 ttcaataatacaattac 42234631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 33071922 - 33072116
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||     
T  33071922 agtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttcttttagtttgttatgaagtttgttacaagtttgttggag 33072021  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  33072022 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcat 33072116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 28644566 - 28644757
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  28644566 agtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagag 28644665  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatatttt 198  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  28644666 gttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacagtgtatataagctacctcctttgtatatttt 28644757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 30410482 - 30410291
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | ||||||| ||||||||||||||||||||||||||||||||     
T  30410482 agtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttaatttgttatgaagtttgttacaagtttgttagag 30410383  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatatttt 198  Q
    ||||| | |||||||||||| ||||||||||||||||| ||||||||||| || ||||| ||||||||||||||| |||||||||| |||||    
T  30410382 gttagtagataagatctagattttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttt 30410291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 43807633 - 43807485
Alignment:
Q  10 ttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagatgtt 109  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||    
T  43807633 ttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgttagaggtt 43807534  T
Q  110 agcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    |||||||||| |   ||||||||||||||||||||||||||||||||||    
T  43807533 agcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43807485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 43812192 - 43812044
Alignment:
Q  10 ttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagatgtt 109  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||    
T  43812192 ttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgttagaggtt 43812093  T
Q  110 agcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    |||||||||| |   ||||||||||||||||||||||||||||||||||    
T  43812092 agcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43812044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 197837 - 197684
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  197837 agtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 197738  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  197737 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 202355 - 202202
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  202355 agtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 202256  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  202255 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 202202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 312674 - 312521
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  312674 agtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 312575  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  312574 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 312521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 317192 - 317039
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  317192 agtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 317093  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  317092 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 317039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 38757007 - 38757186
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | ||||||||||            ||||||||||||||||||     
T  38757007 agtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgttagag 38757094  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatatttt 198  Q
    ||||| | ||||||||||||||||||||||||||||||| |||||||||| || | ||| ||||||||||||||| ||||||||||||||||    
T  38757095 gttagtagataagatctagagtttgttacattgcttgtgattcaagcaacctagccagatattgtatataagctacctcctttgtatatttt 38757186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 55 - 198
Target Start/End: Complemental strand, 30405925 - 30405782
Alignment:
Q  55 taatcacactttgttttagtttgttatgaagtttgttacaagtttgttagatgttagcaaataagatctagagtttgttacattgcttgtgcttcaagca 154  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||||||||||||||| |||||||||    
T  30405925 taatcacattctgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagaatttgttacattgcttgtacttcaagca 30405826  T
Q  155 acttaactagacattgtatataagctatctcctttgtatatttt 198  Q
    || || ||||| ||||||||||||||| |||||||||| |||||    
T  30405825 acctagctagatattgtatataagctacctcctttgtacatttt 30405782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 41945343 - 41945434
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagttt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||    
T  41945343 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgtta-caagttggttacaagttt 41945434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 41949806 - 41949902
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtta 103  Q
    ||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  41949806 agtttcttttaattcaagcttagtttagtgataatcacaatcagtgattaatcacactctgttttagtttgttttgaagtttgttacaagttggtta 41949902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 27435223 - 27435169
Alignment:
Q  127 gtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagcta 181  Q
    ||||||||||| |||||||||||||||||| ||| |||| |||||||||||||||    
T  27435223 gtttgttacatagcttgtgcttcaagcaacctaagtagatattgtatataagcta 27435169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 30405956 - 30405918
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcaca 45  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30405956 agtttgttttaattcaagtttagtttagtgataatcaca 30405918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 42234574 - 42234537
Alignment:
Q  280 acaaaccctaaaaactacaaaattgcttatggtttcat 317  Q
    |||||||||||||||||||||||||||| |||||||||    
T  42234574 acaaaccctaaaaactacaaaattgcttctggtttcat 42234537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 1286743 - 1286794
Alignment:
Q  127 gtttgttacattgcttgtgcttcaagcaactta-actagacattgtatataag 178  Q
    ||||||||| |||||||| |||||||||||||| ||||||| |||||||||||    
T  1286743 gtttgttactttgcttgtacttcaagcaacttatactagac-ttgtatataag 1286794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 10317216 - 10317018
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  10317216 agtttgttttaattcaagtttagtttagttataatcacaatcagtgattaatcacactttgttgtagtttgttatgaagtttgttacaagtttgttagag 10317117  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcataaga 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10317116 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatattttcataaga 10317018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 8892774 - 8892580
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga 105  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  8892774 agtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaaatttgttaga 8892675  T
Q  106 tgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttca 200  Q
      |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8892674 gattagcaaataagatatagagtttgttacatcgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatattttca 8892580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 31670094 - 31670286
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga 105  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31670094 agtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttgttaga 31670193  T
Q  106 tgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatatttt 198  Q
     ||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  31670194 ggttagcagataagatctagagtttgttacattgcttctgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 31670286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 53722011 - 53722204
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  53722011 agtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagag 53722110  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttca 200  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||| |||||||    
T  53722111 gctagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctatatattgtatataagctacctcctttgtacattttca 53722204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 27186146 - 27186344
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttgtttt--agttt-gttatgaagtttgttacaagtttgtt 102  Q
    |||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||    
T  27186146 agtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgttttttagttttgttatgaagtttgttacaagtttgtt 27186245  T
Q  103 agatgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcat 201  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||  |||||||||||||||||||    
T  27186246 agaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatattttcat 27186344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 43683813 - 43683629
Alignment:
Q  10 ttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagatgtt 109  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||           || |||    
T  43683813 ttgttttaattcaagtttattttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgtta-----------gaggtt 43683725  T
Q  110 agcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcataaga 205  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||    
T  43683724 agcaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacatcctttgtatattttcataaga 43683629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 3770846 - 3770999
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  3770846 agtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 3770945  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  3770946 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3770999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 44147027 - 44147180
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  44147027 agtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 44147126  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  44147127 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44147180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 44151562 - 44151715
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  44151562 agtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 44151661  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  44151662 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44151715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 50628083 - 50627901
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga 105  Q
    |||||||||||||||||| ||||||| |||| |||||||||||| |||||||||||  ||| |||||||||||||            |||||||||||||    
T  50628083 agtttgttttaattcaagattagttttagtg-taatcacaatcagtgattaatcacttttttttttagtttgtta------------caagtttgttaga 50627997  T
Q  106 tgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcat 201  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||    
T  50627996 ggttagcaaataagatctagagtttgttacattgcttgtacttcaagcaacttagctagacattgtatataagctacctcctttatatattttcat 50627901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 35842843 - 35842948
Alignment:
Q  99 tgttagatgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatatttt 198  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||| ||| ||||||||||||||||    
T  35842843 tgttagaggttagcaaataagatctagagtttgttacaatgcttgtgcttcaagcaacttagttagacattgtatataaactacctcctttgtatatttt 35842942  T
Q  199 cataag 204  Q
    ||||||    
T  35842943 cataag 35842948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 41884930 - 41885081
Alignment:
Q  8 gtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagatg 107  Q
    |||||||||||||||||||||||||||||||||||||||| | || ||||||||| || | || ||||||||||||| ||||||||||||| ||||||      
T  41884930 gtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttagttagaga 41885028  T
Q  108 ttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaac 161  Q
    |||||  ||||||| ||| ||||||||| | |||||| ||||||||||| ||||    
T  41885029 ttagctcataagat-tagggtttgttacttagcttgtacttcaagcaacctaac 41885081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 31359155 - 31359329
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||| ||||||||||||| | || ||||||||| || | || |||||| |||||| ||||||||||||| ||||||     
T  31359155 agtttgttttaattcaagtttagtttaatgataatcacaattagtggttaatcacatttagattcagtttgctatgaattttgttacaagttagttagag 31359254  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacat-tgtatataagcta 181  Q
     |||||  ||||| | ||| ||||||||| | |||||| ||||||||||| |||| | || | |||||||||||||    
T  31359255 attagctcataaggt-tagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataagcta 31359329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 49274664 - 49274491
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    |||||||||||||||||||||||||||||||| |||| ||| | || ||||||||| || | || ||||||||||||| ||||||||||||| ||||||     
T  49274664 agtttgttttaattcaagtttagtttagtgatgatcataattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttagttagag 49274566  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacat-tgtatataagcta 181  Q
     |||||  ||||| | ||| ||||||||| | |||||| ||||||||||| |||| | || | |||||||||||||    
T  49274565 attagctcataaggt-tagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataagcta 49274491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 31354682 - 31354772
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtt 98  Q
    |||||||||||||| |||||||||||||||||||| ||||| | || ||||||||| || | || || |||||||||| |||||||||||||    
T  31354682 agtttgttttaatttaagtttagtttagtgataattacaattagtggttaatcacatttagattcag-ttgttatgaattttgttacaagtt 31354772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 45976277 - 45976167
Alignment:
Q  51 tgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga-tgttagcaaataagatctagagtttgttacattgcttgtgcttc 149  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||||||| ||||| | |||| ||||||||  ||| | ||||||| || ||||||||||    
T  45976277 tgattaatcacatcttgttttagtttgttttgaagtttgttacaagttttttagagttttagaaaataagagttag-ggttgttactttacttgtgcttc 45976179  T
Q  150 aagcaacttaac 161  Q
    ||| ||| ||||    
T  45976178 aagtaacctaac 45976167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 35842797 - 35842847
Alignment:
Q  30 tttagtgataatcacaatcaatgattaatcacactttgttttagtttgtta 80  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  35842797 tttagtgataatcacaatcagtgattaatcacactttgttttagtatgtta 35842847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 53785880 - 53786024
Alignment:
Q  37 ataatcacaatcaatgattaatcacactt--tgttttagtttgttatgaagtttgttacaagtttgttagatgttagcaaataagatctagagtttgtta 134  Q
    ||||||||| ||| || ||||||||| ||  |||||| |||||||| ||| ||||||||||||||||||||   ||||  |||   | ||| ||||||||    
T  53785880 ataatcacactcagtggttaatcacatttagtgtttttgtttgttaagaa-tttgttacaagtttgttagaaactagcttatatagt-tagggtttgtta 53785977  T
Q  135 cattgcttgtgcttcaagcaacttaactagacattgtatataagcta 181  Q
    ||| |||||||||||||||||| |||||||   | ||||||||||||    
T  53785978 catagcttgtgcttcaagcaacctaactagttctagtatataagcta 53786024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 9105279 - 9105472
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||     
T  9105279 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacattttgctttagtttgttatgaagtatgttacaagtttgttagag 9105378  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttca 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||    
T  9105379 gttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacctaactagacattgtatatgagctacctcctttgtatattttca 9105472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 11004556 - 11004359
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||| ||||||||||| |||||||||||||||||||     
T  11004556 agtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacattttgttttagcttgttatgaagattgttacaagtttgttagag 11004457  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcataag 204  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||    
T  11004456 gttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacctagctagacattgtatataagctacctcctttgtatattttcataag 11004359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 43547730 - 43547923
Alignment:
Q  10 ttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttgtttt-agtttgttatgaagtttgttacaagtttgttagatg 107  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| |    
T  43547730 ttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacattttgtttttagtttgttatgaagtttgttacaagtttgttagagg 43547829  T
Q  108 ttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcat 201  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  43547830 ttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagcaagacattgtatataagctatctcctttgtatattttcat 43547923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 9697590 - 9697786
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttgtttt-agtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  9697590 agtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgtttttagtttgttatgaagtttgttacaagtttgttag 9697689  T
Q  105 atgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcat 201  Q
    | |||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||  |||||||||||||||||||    
T  9697690 aggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatattttcat 9697786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 21847120 - 21847306
Alignment:
Q  13 ttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagatgttag 111  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  21847120 ttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttag 21847219  T
Q  112 caaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatatttt 198  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||    
T  21847220 cagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 21847306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 21850210 - 21850396
Alignment:
Q  13 ttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagatgttag 111  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  21850210 ttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttag 21850309  T
Q  112 caaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatatttt 198  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||    
T  21850310 cagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 21850396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 54172077 - 54171924
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  54172077 agtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 54171978  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  54171977 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 54171924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 54167497 - 54167344
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  54167497 agtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 54167398  T
Q  105 atgttagcaaataa--gatctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | |||| |||||||  |   ||||||||||||||||||||||||||||||||||    
T  54167397 aggttaccaaataagggtgttagagtttgttacattgcttgtgcttcaagcaac 54167344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 43554645 - 43554764
Alignment:
Q  79 tatgaagtttgttacaagtttgttagatgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataag 178  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| || |||||||||||||   ||||||||||||| ||    
T  43554645 tatgaagtttgttacaagtttgttagaggttaacaaataagatctagagtttattacattgcttctgtttcaagcaacttagtaagacattgtatatgag 43554744  T
Q  179 ctatctcctttgtatatttt 198  Q
    ||| ||| ||||||||||||    
T  43554745 ctacctcttttgtatatttt 43554764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 39399275 - 39399101
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||| | || ||||||||| || | || ||||||||||||| ||||||||||||| ||||||     
T  39399275 agtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagag 39399176  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacat-tgtatataagcta 181  Q
     |||||  ||||| | ||| ||||||||| | |||||| ||||||||||| |||| | || | |||||||||||||    
T  39399175 attagctcataaggt-tagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataagcta 39399101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 755891 - 756049
Alignment:
Q  64 tttgttttagtttgttatgaagtttgttacaagtttgttagatgttagcaaataaga-tctagagtttgttacattgcttgtgcttcaagcaacttaact 162  Q
    |||||||||||||||| |||||||||||||||||||||||||   || | ||||| |   ||| ||||||||||||||||||||||||||| || |||||    
T  755891 tttgttttagtttgttttgaagtttgttacaagtttgttagagtgtaactaataaaaggttagggtttgttacattgcttgtgcttcaagctacctaact 755990  T
Q  163 agacattgtatataagctatctcctttgtatattttcataagatttcaataatacaattac 223  Q
    |||   ||||||||||||| || | ||||| ||| |||| ||  |||||||| ||||||||    
T  755991 agatggtgtatataagctaccttcattgtaaattctcattag--ttcaataacacaattac 756049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 43554296 - 43554371
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttg-ttttagtttgtta 80  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| |||| |||||||||||||    
T  43554296 agtttgttttaattcaagtttagttttagtgataatcacaatcagtgattagtcacattttgtttttagtttgtta 43554371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 161
Target Start/End: Complemental strand, 38175891 - 38175785
Alignment:
Q  54 ttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagatgttagcaaataagatctagagtttgttacattgcttgtgcttcaagc 153  Q
    ||||||||| || |||| ||||||||||||| ||||||||||||| ||||||  |||||  ||||||| ||| ||||||||| | |||||| ||||||||    
T  38175891 ttaatcacatttagtttcagtttgttatgaattttgttacaagttagttagagattagctcataagat-tagggtttgttacttagcttgtacttcaagc 38175793  T
Q  154 aacttaac 161  Q
    ||| ||||    
T  38175792 aacctaac 38175785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 43548001 - 43548038
Alignment:
Q  280 acaaaccctaaaaactacaaaattgcttatggtttcat 317  Q
    |||||||||||||||||||||||||||| |||||||||    
T  43548001 acaaaccctaaaaactacaaaattgcttctggtttcat 43548038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 43554846 - 43554883
Alignment:
Q  280 acaaaccctaaaaactacaaaattgcttatggtttcat 317  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  43554846 acaaaccctagaaactataaaattgcttatggtttcat 43554883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 755824 - 755856
Alignment:
Q  73 gtttgttatgaagtttgttacaagtttgttaga 105  Q
    ||||||| |||||||||||||||||||||||||    
T  755824 gtttgttttgaagtttgttacaagtttgttaga 755856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 17096427 - 17096236
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  17096427 agtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagag 17096328  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatatttt 198  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||    
T  17096327 gttagcagataagatctatagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtacatttt 17096236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 17895877 - 17895678
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga 105  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||| |||||||||||| |||||||||||||||||||||||||    
T  17895877 agtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttattttagtttgttctgaagtttgttacaagtttgttaga 17895778  T
Q  106 tgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcataaga 205  Q
     |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| |||||||||||    
T  17895777 ggttagcaaataagatctagaatttgttacattgcttgtgcttcaagcaacttagctaggcattgtatataagctacctcctttgtattttttcataaga 17895678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 27552263 - 27552072
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||| |||||||| |     
T  27552263 agtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaggtttgttaaac 27552164  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatatttt 198  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||    
T  27552163 gttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 27552072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 8315657 - 8315466
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttaga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  8315657 agtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttaga 8315558  T
Q  106 tgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattt 197  Q
     ||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||    
T  8315557 ggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 8315466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 14531941 - 14531746
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga 105  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||    
T  14531941 agtttgttttaattcaagtttagttttagttataatcacaatcaatgattaatcacattttgttttagttcgttatgaagtttgttacaggtttgttaga 14531842  T
Q  106 tgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcat 201  Q
     |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||  ||| | |||||||||||||||||    
T  14531841 ggttagcaaataagatctagagtttgttacattgcttgtgcttgaagcaacttagctagacattgtatatactctaccacctttgtatattttcat 14531746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 8320195 - 8320005
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||||||||||||     
T  8320195 agtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaatatgttttagtttgttatgaagtttgttacaagtttgttagag 8320096  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattt 197  Q
    ||||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| |||||||||| ||||    
T  8320095 gttagtagataagatctagagtttgttacattgcttgtgcttcaagaaacttagctagatattgtatataagctacctcctttgtacattt 8320005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 17779918 - 17780111
Alignment:
Q  7 agtttgtttt-aattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga 105  Q
    |||||||||| |||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  17779918 agtttgttttgaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagtttgttaaaagtttgttaga 17780017  T
Q  106 tgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttc 199  Q
     | ||| | ||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||    
T  17780018 ggctagtagataagatttagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctatctcctttgtacattttc 17780111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 17886996 - 17886803
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga 105  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| ||||       ||||||||||||    
T  17886996 agtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttataaagta------aagtttgttaga 17886903  T
Q  106 tgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcataaga 205  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  17886902 ggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcagcttagctagacattgtatataagctacctcctttgtattttttcataaga 17886803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 190
Target Start/End: Complemental strand, 27574880 - 27574708
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||           ||||||     
T  27574880 agtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagttt-----------gttagag 27574792  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttg 190  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  27574791 gttagcagataagatctaaagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttg 27574708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 17159610 - 17159700
Alignment:
Q  16 taattcaagtttagtttagtgataatcacaatca-atgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga 105  Q
    |||||||||||||| |||||||||||||  || |  ||||| |||| |||||||||||||||||| ||| |||||||||||||| ||||||    
T  17159610 taattcaagtttagattagtgataatcatgattagttgattgatcatactttgttttagtttgttttgacgtttgttacaagttggttaga 17159700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 17163676 - 17163730
Alignment:
Q  51 tgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga 105  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  17163676 tgattgatcacactttgttttagtttgttttgaagtttgttacaagttggttaga 17163730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 7888305 - 7888213
Alignment:
Q  15 ttaattcaagtttagtttagtgataatcacaatcaat-gattaatcacactttg-ttttagtttgttatgaagtttgttacaagtttgttaga 105  Q
    ||||||||||||||  |||||||||||||   | | | |||||||||||||||| |||||||||||| ||||||||||||||| |||||||||    
T  7888305 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaactttgttaga 7888213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 181
Target Start/End: Complemental strand, 6440979 - 6440839
Alignment:
Q  41 tcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagatgttagcaaataagatctagagtttgttacattgc 140  Q
    ||||||| | || ||||||||| || | || ||||||||||||| ||||||||||||| ||||||  |||||  ||||| | ||| ||||||||| | ||    
T  6440979 tcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-tagggtttgttacttagc 6440881  T
Q  141 ttgtgcttcaagcaacttaactagacat-tgtatataagcta 181  Q
    |||| ||||||||||| |||| | || | |||||||||||||    
T  6440880 ttgtacttcaagcaacctaaccaaacttgtgtatataagcta 6440839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 21417210 - 21417159
Alignment:
Q  51 tgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtta 103  Q
    ||||| || |||||||||||||||| ||| |||||||||||||||||| ||||    
T  21417210 tgattgattacactttgttttagtt-gttttgaagtttgttacaagttggtta 21417159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 43591974 - 43591777
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||  ||||||||     
T  43591974 agtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcgcactttattttagtttgttatgaagtttgttacaatattgttagag 43591875  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcataag 204  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||    
T  43591874 gttagcaaataaaatctagagtttgttacattgcttgtgcttcaagcaacttggctagacattgtatataagctacctcctttgtatattttcataag 43591777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 16588631 - 16588440
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||| | || ||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  16588631 agtttgttttaattcaagtttagtttagtgataatcacaataagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagag 16588532  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatatttt 198  Q
    |||| || ||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  16588531 gttatcatataagatctagagtttgttacattgcttgtgttttaagcaacttagctagacattgtatataagctacctcctttgtatatttt 16588440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 39793835 - 39794025
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||| || | ||||||||||||||||||||||||||||||||||||||||     
T  39793835 agtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatctcattctgttttagtttgttatgaagtttgttacaagtttgttagag 39793934  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattt 197  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||    
T  39793935 gttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 39794025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 26311526 - 26311705
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | ||||||||||            ||||||||||||||||||     
T  26311526 agtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgttagag 26311613  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatatttt 198  Q
    ||||| | |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||  |||||||||||||||    
T  26311614 gttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtatatttt 26311705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 26316017 - 26316196
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | ||||||||||            ||||||||||||||||||     
T  26316017 agtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgttagag 26316104  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatatttt 198  Q
    ||||| | |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||  |||||||||||||||    
T  26316105 gttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtatatttt 26316196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 10504440 - 10504614
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || | || ||||||||||||| ||||||||||||| ||||||     
T  10504440 agtttgttttaattcaagtttagtttagtgataatcacaattagtgattaatcacatttagattcagtttgttatgaattttgttacaagttagttagag 10504539  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacat-tgtatataagcta 181  Q
     |||||  ||||| | ||| ||||||||| | |||||| ||||||||||| |||| | || | |||||||||||||    
T  10504540 attagctcataaggt-tagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataagcta 10504614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 41879945 - 41879996
Alignment:
Q  127 gtttgttacattgcttgtgcttcaagcaactta-actagacattgtatataag 178  Q
    ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||    
T  41879945 gtttgttactttgcttgtgcttcaagcaacttatactagac-ttgtatataag 41879996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 32486139 - 32485944
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga 105  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32486139 agtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgttaga 32486040  T
Q  106 tgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcat 201  Q
     ||||||||||||||||||||||||||||||||||||||||||||| |  |||| ||||||||||||||||||||| ||||||| |||||||||||    
T  32486039 ggttagcaaataagatctagagtttgttacattgcttgtgcttcaacctccttagctagacattgtatataagctacctcctttatatattttcat 32485944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 30695297 - 30695489
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  30695297 agtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgttagag 30695396  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttc 199  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||||    
T  30695397 gttagtatataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttc 30695489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 26336960 - 26336743
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttgtttt-agtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||| ||| ||||||||||||||||  |||||||||||| |||||||| |||||||||||| |||||||||| |||||||||    
T  26336960 agtttgttttaattcaagtttaattttagtgataatcacaatcggtgattaatcacattttgtttttagtttgttatgatgtttgttacatgtttgttag 26336861  T
Q  105 atgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcataag 204  Q
    | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  26336860 aggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatattttcattag 26336761  T
Q  205 atttcaataatacaattac 223  Q
    |  |||||| |||||||||    
T  26336760 a-atcaatattacaattac 26336743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 19502311 - 19502511
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaa-tcacactttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  19502311 agtttgttttaatttaagtttagttttagtgataatcacaatcagtgattaaatcacattttgttttagtttgttatgaagtttgttacaagtttgttag 19502410  T
Q  105 atgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcataag 204  Q
    | ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||||||||||    
T  19502411 aggttagaaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctaaacattgtatataagctacctcctttatatattttcataag 19502510  T
Q  205 a 205  Q
    |    
T  19502511 a 19502511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 36632318 - 36632503
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||            ||||||||||||||||||     
T  36632318 agtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacactttgttttagtt------------tgttacaagtttgttagag 36632405  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcataag 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  36632406 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcataag 36632503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 43384972 - 43385126
Alignment:
Q  23 agtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagatgttagcaaataagatc 122  Q
    ||||||||||||||||||||| ||| | || ||||||||| ||  |||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  43384972 agtttagtttagtgataatcataattagtggttaatcacatttgcttttagtttgttatgaagtttgttacaagtttgttagaagttagcaaataaaatc 43385071  T
Q  123 tagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataa 177  Q
    ||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  43385072 tagggtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataa 43385126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 7099527 - 7099374
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  7099527 agtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 7099428  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  7099427 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 7104096 - 7103943
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  7104096 agtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 7103997  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  7103996 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7103943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 12018735 - 12018888
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  12018735 agtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 12018834  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  12018835 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12018888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 12023293 - 12023446
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  12023293 agtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 12023392  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  12023393 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12023446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 20830434 - 20830307
Alignment:
Q  54 ttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagatgttagcaaataagatctagagtttgttacattgcttgtgcttcaagc 153  Q
    ||||||||| || |||| ||||||||||||||||||||||||||||||||||  ||||||||||||||| || |||||||||||||||||||||||||||    
T  20830434 ttaatcacatttagtttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataagatcaagtgtttgttacattgcttgtgcttcaagc 20830335  T
Q  154 aacttaactagacattgtatataagcta 181  Q
    ||||||||||||||||||||||||||||    
T  20830334 aacttaactagacattgtatataagcta 20830307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 16794112 - 16794265
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||| | || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  16794112 agtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 16794211  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  16794212 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16794265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 16798673 - 16798826
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||| | || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  16798673 agtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 16798772  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  16798773 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16798826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 7 - 145
Target Start/End: Complemental strand, 40371888 - 40371750
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||| |||||||||||||||||||     
T  40371888 agtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagattgttacaagtttgttagag 40371789  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtg 145  Q
    | ||| | |||||||||||||||| |||||||| |||||    
T  40371788 gctagtagataagatctagagtttattacattgtttgtg 40371750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 40367753 - 40367569
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||            |||||||||||||     
T  40367753 agtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgtta------------caagtttgttagag 40367666  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagc-aacttaactagacattgtatataagctatctcctttgtatattttcata 202  Q
    | ||| | ||||||||||||||||||||||||||||||||||||||| |||||   |||| ||||||||||||||| |||||||||| |||||||||    
T  40367665 gctagtagataagatctagagtttgttacattgcttgtgcttcaagcaaacttggttagatattgtatataagctacctcctttgtacattttcata 40367569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 10274550 - 10274724
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || | || ||||||||||||| ||||||||||||| ||||||     
T  10274550 agtttgttttaattcaagtttagtttagtgataatcacaattaatggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagag 10274649  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacat-tgtatataagcta 181  Q
     |||||  ||||| | ||| ||||||||  | |||||| ||||||||||| |||| | || | |||||||||||||    
T  10274650 attagctcataaggt-tagggtttgttatttagcttgtacttcaagcaacctaaccaaacttgtgtatataagcta 10274724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 37682040 - 37682182
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||           |||||||||||    
T  37682040 agtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagtttgttag 37682128  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  37682129 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37682182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 10277208 - 10277382
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||| | || ||||||||| || | || ||||||||||||| ||||||||||||| ||||||     
T  10277208 agtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagag 10277307  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacat-tgtatataagcta 181  Q
     |||||  ||||| | ||| ||||||||| | ||||||  || ||||||| |||| | || | |||||||||||||    
T  10277308 attagctcataaggt-tagggtttgttacttagcttgtattttaagcaacctaaccaaacttgtgtatataagcta 10277382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 37658736 - 37658878
Alignment:
Q  7 agtttgttttaattcaagtttag-tttagtgataatcacaatcaatgattaatcac-actttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||| || |||||||| | |||||||||| ||||||||           |||||||||||    
T  37658736 agtttgttttaattcaagtttagttttagtcataatcataatcagtggttaatcacaagtttgttttagcttgttatg-----------aagtttgttag 37658824  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  37658825 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37658878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 20808746 - 20808675
Alignment:
Q  54 ttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagatgttagcaaataagatctag 125  Q
    ||||||||| || |||| |||||||||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  20808746 ttaatcacatttagtttcagtttgttatgaagttagttacaagtttgttagaggttaacaaataagatctag 20808675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 5733082 - 5733133
Alignment:
Q  127 gtttgttacattgcttgtgcttcaagcaactta-actagacattgtatataag 178  Q
    ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||    
T  5733082 gtttgttactttgcttgtgcttcaagcaacttatactagac-ttgtatataag 5733133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 12999618 - 12999426
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga 105  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12999618 agtttgttttaatttaagtttagttttagtgataataacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgttaga 12999519  T
Q  106 tgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatatttt 198  Q
     ||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12999518 ggttagcagataagatctagagtttgttacattacttgtgcttcaagcaacttagctagacattgtatataagctatctcctttgtatatttt 12999426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 8055396 - 8055586
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | | |||||||||||||||||||||||| |||||||||||||     
T  8055396 agtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttgcaagtttgttagag 8055495  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattt 197  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||    
T  8055496 gttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 8055586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 8050843 - 8051033
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | | ||||||||||||||||||||||||||||||||||||||     
T  8050843 agtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttacaagtttgttagag 8050942  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattt 197  Q
    ||||| | |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||  |||||||||| ||||    
T  8050943 gttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctgcctcctttgtacattt 8051033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 36670507 - 36670660
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  36670507 agtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 36670606  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  36670607 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36670660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 36675055 - 36675208
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  36675055 agtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 36675154  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  36675155 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36675208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 6463579 - 6463400
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||            |||||||||||||     
T  6463579 agtttgtcttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgtta------------caagtttgttagag 6463492  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatatttt 198  Q
    ||||| | ||||||||||||||||||||||||  |||||||||||||||| || ||||| ||||||||||||||| |||||||||| |||||    
T  6463491 gttagtagataagatctagagtttgttacattatttgtgcttcaagcaacctagctagatattgtatataagctacctcctttgtacatttt 6463400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 13271127 - 13270980
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga 105  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||            ||||||||||||    
T  13271127 agtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacactttattttagtttgttat------------aagtttgttaga 13271040  T
Q  106 tgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactaga 165  Q
     ||||| |||||||||||| |||||||||||||| || |||||||||||||||| |||||    
T  13271039 ggttagtaaataagatctaaagtttgttacattgtttttgcttcaagcaacttagctaga 13270980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 35950591 - 35950417
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||| | || ||||||||| || | || ||||||||||||| ||||||||||||| ||||||     
T  35950591 agtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttaggttcagtttgttatgaattttgttacaagttagttagag 35950492  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacat-tgtatataagcta 181  Q
     |||||   |||| | ||| ||||||||| | |||||| ||||||||||| |||| | || | |||||||||||||    
T  35950491 attagctcgtaaggt-tagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataagcta 35950417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 41093829 - 41093976
Alignment:
Q  8 gtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagatg 107  Q
    |||||||||||||||| ||||||||||||||||||||||| | |||||||||| | || | || ||||||||||||| |||||||||| || ||||||      
T  41093829 gtttgttttaattcaaatttagtttagtgataatcacaattagtgattaatcatatttagattcagtttgttatgaattttgttacaaattagttagaga 41093928  T
Q  108 ttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    |||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  41093929 ttagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 41093976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 29767953 - 29768099
Alignment:
Q  16 taattcaagtttagtttagtgataatcacaatcaat-gattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga--tgttagc 112  Q
    ||||||||||||||||||||||||||||  || ||| |||| ||||||||||||||||||||||| | |||||||||||||||| |||| |  | ||||     
T  29767953 taattcaagtttagtttagtgataatcatgattaattgattgatcacactttgttttagtttgttttaaagtttgttacaagttggttataagttttagg 29768052  T
Q  113 aaataagatctagagtttgttacattgcttgtgcttcaagcaacttaac 161  Q
    ||||||||  ||||| ||||||| || ||||||||||||| ||| ||||    
T  29768053 aaataagagttagag-ttgttac-ttacttgtgcttcaagtaacataac 29768099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 34590280 - 34590366
Alignment:
Q  68 ttttagtttgttatgaagtttgttacaagtttgttagatgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||| || |||  ||| |||||||| || |||||||||| |||||||    
T  34590280 ttttagtttgttatgaa-tttgttacaagtttgttagagattagcatat-agagttagggtttgttatatagcttgtgctttaagcaac 34590366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 94
Target Start/End: Complemental strand, 27403730 - 27403696
Alignment:
Q  60 acactttgttttagtttgttatgaagtttgttaca 94  Q
    |||||||||||||||||||| ||||||||||||||    
T  27403730 acactttgttttagtttgttttgaagtttgttaca 27403696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 47419729 - 47419539
Alignment:
Q  9 tttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagatgt 108  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||    
T  47419729 tttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttcttagaggt 47419630  T
Q  109 tagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttc 199  Q
    ||||| |||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  47419629 tagcagataatatctagagtttgttacattgtttgtgtttcaagcaacttagctagacattgtatataagctacctcctttgtatattttc 47419539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 22901158 - 22901351
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  22901158 agtttgttttaattaaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 22901257  T
Q  105 atgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatatttt 198  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  22901258 aggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 22901351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 27761401 - 27761592
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||||||||||||     
T  27761401 agtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgttagag 27761500  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatatttt 198  Q
    ||| | | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||    
T  27761501 gtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 27761592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 35705638 - 35705836
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgtt-atgaagtttgttacaagtttgttaga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  35705638 agtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgtttatggagtttgttacaagtttgttaga 35705737  T
Q  106 tgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatc-tcctttgtatattttcataag 204  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||| | | |||||||||||||||||||    
T  35705738 ggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaac-cagctagacattgtatataagctacctttctttgtatattttcataag 35705836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 27756850 - 27757041
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||| || | ||||||||||||||||||||||||||||||||||||||||     
T  27756850 agtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcgcattctgttttagtttgttatgaagtttgttacaagtttgttagag 27756949  T
Q  107 gttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatatttt 198  Q
    ||| | | ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||    
T  27756950 gtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 27757041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 7466665 - 7466479
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga 105  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||            |||||||||||||    
T  7466665 agtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgtta------------caagtttgttaga 7466578  T
Q  106 tgttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcataag 204  Q
     ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  7466577 ggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcataag 7466479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 733811 - 733609
Alignment:
Q  16 taattcaagtttagtttagtgataatcacaatcaa-tgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagatgttagcaa 114  Q
    |||||||||||||| |||||||||||||   | || || |||||||||  ||   ||||||||||||||| |||||||||| ||||||||| ||||||||    
T  733811 taattcaagtttagattagtgataatcatgtttaaatggttaatcacatattcagttagtttgttatgaaatttgttacaattttgttagaggttagcaa 733712  T
Q  115 ataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctatctcctttgtatattttcataagatttcaataa 214  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||  |||||||    
T  733711 ataagatctagagtttgttacattgcttgtgcttcgagcaacttagctagacattgtatataagctacctcctttgtatactttcataaga--tcaataa 733614  T
Q  215 tacaa 219  Q
    |||||    
T  733613 tacaa 733609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 7940236 - 7940083
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  7940236 agtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 7940137  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  7940136 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7940083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 7944789 - 7944636
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  7944789 agtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 7944690  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  7944689 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7944636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 175
Target Start/End: Complemental strand, 13828208 - 13828087
Alignment:
Q  54 ttaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagatgttagcaaataagatctagagtttgttacattgcttgtgcttcaagc 153  Q
    ||||||||| |||  ||| ||||||| |||||||||||||||||||||||||   || | ||||| |  ||| || ||||||||||||||||||||||||    
T  13828208 ttaatcacattttcattttgtttgttctgaagtttgttacaagtttgttagagtgtatctaataatagttagggtctgttacattgcttgtgcttcaagc 13828109  T
Q  154 aacttaactagacattgtatat 175  Q
     || |||||||| | |||||||    
T  13828108 tacctaactagatagtgtatat 13828087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 8674977 - 8675113
Alignment:
Q  16 taattcaagtttagtttagtgataatcacaatcaa-tgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttagatgttagcaa 114  Q
    |||||||||||||| |||||||||||||   | || || ||||||||||||   || |||||||| ||||||||||||| || ||||||||   |||| |    
T  8674977 taattcaagtttagattagtgataatcatgtttaaatggttaatcacacttcagtt-agtttgttttgaagtttgttactaggttgttagagtgtagcta 8675075  T
Q  115 ataagatctagagtttgttac-attgcttgtgcttcaa 151  Q
    ||||    ||||||||||||| ||||||||||||||||    
T  8675076 ataattgttagagtttgttacaattgcttgtgcttcaa 8675113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 7510 - 7662
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgttaga 105  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7510 agtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgttaga 7609  T
Q  106 tgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
     ||||||||||||| |   ||||||||||||||||||||||| ||||||||||    
T  7610 ggttagcaaataaggttgttagagtttgttacattgcttgtgtttcaagcaac 7662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 2984 - 3137
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  2984 agtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 3083  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  3084 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 45018 - 44865
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  45018 agtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 44919  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  44918 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 49598 - 49445
Alignment:
Q  7 agtttgttttaattcaagtttagttt-agtgataatcacaatcaatgattaatcacac-tttgttttagtttgttatgaagtttgttacaagtttgttag 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  49598 agtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttag 49499  T
Q  105 atgttagcaaataagat--ctagagtttgttacattgcttgtgcttcaagcaac 156  Q
    | ||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  49498 aggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 49445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 60300 - 60201
Alignment:
Q  7 agtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgtttt-agtttgttatgaagtttgttacaagtttgttaga 105  Q
    ||||||||||||||||||||   ||  |  ||||||||||| | |||||||||||| ||  |||| |||||||||| || |||||||| |||||||||||    
T  60300 agtttgttttaattcaagttactttgtgatataatcacaattagtgattaatcacatttaatttttagtttgttataaattttgttaccagtttgttaga 60201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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