View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18823_low_13 (Length: 327)
Name: NF18823_low_13
Description: NF18823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18823_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 34 - 309
Target Start/End: Complemental strand, 37137736 - 37137461
Alignment:
| Q |
34 |
tcaaaacggagatggacaagtccgaaaatagagcagagaatgaacaactcaagctctctaagtatggggatggttctatttgtggctacaattcccttca |
133 |
Q |
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| T |
37137736 |
tcaaaacggagatggacaagtccgaaaatagagcagagaatgaacaactcaagctctctaagtatggggatggttctatttgtggctacaattcccttca |
37137637 |
T |
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| Q |
134 |
gcatcttctcaaggaaaatctcaaacctcatcacttccaggtaatctactctcaaactcaaaccaatcattattatactcaaaactcaaacccatttatt |
233 |
Q |
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| T |
37137636 |
gcatcttctcaaggaaaatctcaaacctcatcacttccaggtaatctactctcaaactcaaaccaatcgttattatactcaaaactcaaacccatttatt |
37137537 |
T |
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| Q |
234 |
cattctgctcacatgctgaattcatccttttagcttgtctattatactttcaactactcttttgacattcccggat |
309 |
Q |
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| T |
37137536 |
tattctgctcacatgctgaattcatccttttagcttgtctattatactttcaactactcttttgacattcccggat |
37137461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 37141542 - 37141469
Alignment:
| Q |
102 |
gatggttctatttgtggctacaattcccttcagcatcttctcaaggaaaatctcaaacctcatcacttccaggt |
175 |
Q |
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| T |
37141542 |
gatggttctatttgtggctacgattcccttcaccatcttctcaaggacaatcttaaaccgcatcatttccaggt |
37141469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 37137786 - 37137758
Alignment:
| Q |
10 |
catcatcacagcaaagaagagtgttcaaa |
38 |
Q |
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| T |
37137786 |
catcatcacagcaaagaagagtgttcaaa |
37137758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 904383 - 904251
Alignment:
| Q |
10 |
catcatcacagcaaagaagagtgttcaaaacggagatggacaagtccgaaaatagagcagagaatgaacaactcaagctctctaagtatggggatggttc |
109 |
Q |
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| T |
904383 |
catcatcaccgcaaagaagagtatt---aacgcagatggataagtcccaaaacagagaacagaatgaacaactcaagctctctaaatatgagtgtggttc |
904287 |
T |
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| Q |
110 |
tatttgtggctacaattcccttcagcatcttctcaa |
145 |
Q |
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| T |
904286 |
tatttgtggctacaattcccttcaacatcttctcaa |
904251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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