View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18823_low_3 (Length: 495)
Name: NF18823_low_3
Description: NF18823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18823_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 34593303 - 34593810
Alignment:
| Q |
1 |
cctacctcaaaaattttattnnnnnnnnnggatagtgtatgaaatcatgggatcaaaaaacaagaaaattacctccaaatcattagtacttttcactttc |
100 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
34593303 |
cctacctcaaaaattttattaaaaaaaaaggatagtgtatgaaatcaagggatcaaaa-acaagaaagttacctccaaatcattagtacttttcactttc |
34593401 |
T |
|
| Q |
101 |
tttccttgaactcctagtttatctgcaataacagaaggaaaattagattttttgagtgttatatcgtattgacatatagaagaaagcaatgcttttgtct |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34593402 |
tttccttgaactcctagtttgtctgcaataacagaaggaaaatttgattttttgagtgttatatcgtattgacatatagaagaaagcaatgcttttgtct |
34593501 |
T |
|
| Q |
201 |
ttctagtaattcatgaattctgttttatctataccttggtttgctgcaataacttccgagttggttattagttcatatgtggtactatccattgcacgaa |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| |
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| T |
34593502 |
ttctagtaattcatgaattctgttttatctataccttggtttactgcaataacttccgagttagttattaattcatatgtggtattatccattgcacgaa |
34593601 |
T |
|
| Q |
301 |
tatcacaaccaaccaataaaggagcctatcagtatatacaaaagaaaccaatttagtgaaaaatcaaaaacgatttgcttaaaggatgtcatgacaatgg |
400 |
Q |
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| T |
34593602 |
tatcacaaccaaccaataaaggagcctatcattatatacaaaagaaaccaatttagtgaaaaatcaaaaacaatttgcttaaaggatgtcatgacaatgg |
34593701 |
T |
|
| Q |
401 |
caatgccatcacaatac-----------------taagtatctaaattttgttt-----catcataccttagctaaagcccatatgctgaaatgtgaacg |
478 |
Q |
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| T |
34593702 |
caatgccatcacaatactagaagtcaagggctggtaagtatctaaattttgtttcatcacatcataccttagctaaagcccatatgctgaaatgtgaacg |
34593801 |
T |
|
| Q |
479 |
atattcttc |
487 |
Q |
| |
|
||||||||| |
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|
| T |
34593802 |
atattcttc |
34593810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 329
Target Start/End: Original strand, 34577750 - 34577845
Alignment:
| Q |
234 |
ccttggtttgctgcaataacttccgagttggttattagttcatatgtggtactatccattgcacgaatatcacaaccaaccaataaaggagcctat |
329 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||| | ||||||||||||| |||||||||| |||||| ||| ||||| ||||||||||||||| |
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| T |
34577750 |
ccttggtttactgcaataacttctgagttgcttatcaattcatatgtggtattatccattgcttgaatattacatccaactaataaaggagcctat |
34577845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 34577609 - 34577665
Alignment:
| Q |
71 |
acctccaaatcattagtacttttcactttctttccttgaactcctagtttatctgca |
127 |
Q |
| |
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||||| |||||||| | ||||| ||||||||||| |||||||| |||||||||||| |
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|
| T |
34577609 |
acctctaaatcattgttgctttttactttctttccctgaactccaagtttatctgca |
34577665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 232 - 329
Target Start/End: Original strand, 32589981 - 32590078
Alignment:
| Q |
232 |
taccttggtttgctgcaataacttccgagttggttattagttcatatgtggtactatccattgcacgaatatcacaaccaaccaataaaggagcctat |
329 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| |||| | |||||| ||| || |||||||||| |||||| ||||||||| |||||||| |||||| |
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| T |
32589981 |
taccttggtttactgcaataacttcagagttgcttatcaattcatacgtgatattatccattgcttgaatattacaaccaactaataaaggggcctat |
32590078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 232 - 329
Target Start/End: Original strand, 32600429 - 32600526
Alignment:
| Q |
232 |
taccttggtttgctgcaataacttccgagttggttattagttcatatgtggtactatccattgcacgaatatcacaaccaaccaataaaggagcctat |
329 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| |||| | |||||| ||| || |||||||||| |||||| ||||||||| |||||||| |||||| |
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| T |
32600429 |
taccttggtttactgcaataacttcagagttgcttatcaattcatacgtgatattatccattgcttgaatattacaaccaactaataaaggggcctat |
32600526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 32589846 - 32589905
Alignment:
| Q |
71 |
acctccaaatcattagtacttttcactttctttccttgaactcctagtttatctgcaata |
130 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||||| |||||||| ||||||||||||||| |
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|
| T |
32589846 |
acctctaaatcattgttgctttttactttctttccctgaactccaagtttatctgcaata |
32589905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 32600294 - 32600353
Alignment:
| Q |
71 |
acctccaaatcattagtacttttcactttctttccttgaactcctagtttatctgcaata |
130 |
Q |
| |
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||||| |||||||| | ||||| ||||||||||| |||||||| ||||||||||||||| |
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|
| T |
32600294 |
acctctaaatcattgttgctttttactttctttccctgaactccaagtttatctgcaata |
32600353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 24884099 - 24884037
Alignment:
| Q |
66 |
aaattacctccaaatcattagtacttttcactttctttccttgaactcctagtttatctgcaa |
128 |
Q |
| |
|
|||| ||||||||||||| | |||||||||| ||||| ||||||| ||||| ||| ||||||| |
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|
| T |
24884099 |
aaatcacctccaaatcatcattacttttcaccttcttcccttgaattcctaatttgtctgcaa |
24884037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 484
Target Start/End: Original strand, 32590173 - 32590213
Alignment:
| Q |
444 |
accttagctaaagcccatatgctgaaatgtgaacgatattc |
484 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||||||||| |
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|
| T |
32590173 |
accttagctaatgcccagatgctgaaatgggaacgatattc |
32590213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 484
Target Start/End: Original strand, 32600621 - 32600661
Alignment:
| Q |
444 |
accttagctaaagcccatatgctgaaatgtgaacgatattc |
484 |
Q |
| |
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||||||||||| ||||| ||||||||||| ||||||||||| |
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| T |
32600621 |
accttagctaatgcccagatgctgaaatgggaacgatattc |
32600661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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