View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18823_low_4 (Length: 479)

Name: NF18823_low_4
Description: NF18823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18823_low_4
NF18823_low_4
[»] chr3 (1 HSPs)
chr3 (139-469)||(43361450-43361790)
[»] chr8 (2 HSPs)
chr8 (197-331)||(14958005-14958139)
chr8 (244-332)||(4490323-4490409)
[»] chr7 (1 HSPs)
chr7 (303-345)||(43814455-43814497)
[»] chr6 (2 HSPs)
chr6 (156-338)||(10383918-10384103)
chr6 (289-329)||(9627252-9627292)
[»] chr1 (3 HSPs)
chr1 (245-332)||(6397739-6397824)
chr1 (373-413)||(41941005-41941045)
chr1 (213-331)||(7440824-7440940)
[»] scaffold0027 (1 HSPs)
scaffold0027 (372-413)||(43829-43870)
[»] chr5 (3 HSPs)
chr5 (196-332)||(19340570-19340704)
chr5 (196-316)||(7237101-7237221)
chr5 (271-331)||(41715034-41715093)
[»] chr2 (1 HSPs)
chr2 (291-331)||(38288563-38288603)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 139 - 469
Target Start/End: Complemental strand, 43361790 - 43361450
Alignment:
Q  139 ctattatcaagttgtgttagaacaacaactagtagaagaataataggaaactaaagtaaagacaatgaacatatgatatttgttaatgtagtttggccaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  43361790 ctattatcaagttgtgttagaacaacaactagtagaagaataataggaaactaaagtaaagacaatgaacacatgatatttgttaacgtagtttggccaa 43361691  T
Q  239 tgatatctacctctgcaactatataacagttttagtttcgtttgtattaatgtgatgagaattaaggtttcagtgttagaagcaatatatatagcactac 338  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| |||||    
T  43361690 tgatatctacctctgcaactatacagcagttttagtttcgtttgtattaatgtgatgagaattaaggtttcagtattacatgcaatatatatagtactac 43361591  T
Q  339 aactactatttagtgttgcaaaattaccgccctttgccttctttaatgtcttttatatatgagtcatatttcaacaagttgtt----------ttataac 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||    
T  43361590 aactactatttagtgttgcaaaattaccgccctttgccttctttaatgtcttttatatatgagtcatatttcaacaagttgtttgctatatcattataac 43361491  T
Q  429 caatcttttgaccattgtcacaactcataacacatcctttg 469  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43361490 caatcttttgaccattgtcacaactcataacacatcctttg 43361450  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 331
Target Start/End: Complemental strand, 14958139 - 14958005
Alignment:
Q  197 aagacaatgaacatatgatatttgttaatgtagtttggccaatgatatctacctctgcaactatataacagttttagtttcgtttgtattaatgtgatga 296  Q
    ||||||||||||||| ||||||||||||   |||| |||||||  |  |||||||||| | |||| | ||| | |||||  |||| ||||| |||||  |    
T  14958139 aagacaatgaacataggatatttgttaacacagttcggccaattgtgcctacctctgcgattatagagcagctatagttatgtttctattactgtgagaa 14958040  T
Q  297 gaattaaggtttcagtgttagaagcaatatatata 331  Q
    |||||| ||||||||||||| ||||||||||||||    
T  14958039 gaattagggtttcagtgttacaagcaatatatata 14958005  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 4490409 - 4490323
Alignment:
Q  244 tctacctctgcaactatataacagttttagtttcgtttgtattaatgtgatgagaattaaggtttcagtgttagaagcaatatatatag 332  Q
    ||||||||||| |||||| | ||||| |||| | |||||||||| | ||||||  |||||||||||||||||  | |||||||||||||    
T  4490409 tctacctctgcgactatagagcagttatagtcttgtttgtattattatgatga--attaaggtttcagtgttgcatgcaatatatatag 4490323  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 43814455 - 43814497
Alignment:
Q  303 aggtttcagtgttagaagcaatatatatagcactacaactact 345  Q
    |||||||||||||| ||||||||||||||||||||| ||||||    
T  43814455 aggtttcagtgttacaagcaatatatatagcactactactact 43814497  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 338
Target Start/End: Original strand, 10383918 - 10384103
Alignment:
Q  156 tagaacaacaactagta---gaagaataataggaaactaaagtaaa-gacaatgaacatatgatatttgttaatgta-gtttggccaatgatatctacct 250  Q
    |||||||||||||||||   ||||| ||||   |||| |||||||| ||||||||||| ||||| ||||||||   | ||| ||||||||||   |||||    
T  10383918 tagaacaacaactagtaacagaagattaattttaaacaaaagtaaaagacaatgaacacatgatctttgttaacacatgttcggccaatgatgcttacct 10384017  T
Q  251 ctgcaactatataacagttttagtttcgtttgtattaatgtgatgagaattaaggtttcagtgttagaagcaatatatatagcactac 338  Q
    |||| | |||| |||| || ||||||| ||||||||| ||||||   ||||| ||||| ||| ||| ||| ||||||||||| |||||    
T  10384018 ctgcgattatagaacaattatagtttcatttgtattactgtgat--aaattagggttttagtattataagtaatatatatagaactac 10384103  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 9627252 - 9627292
Alignment:
Q  289 tgtgatgagaattaaggtttcagtgttagaagcaatatata 329  Q
    |||||| ||||||| ||||||||||||| ||||||||||||    
T  9627252 tgtgataagaattagggtttcagtgttacaagcaatatata 9627292  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 332
Target Start/End: Original strand, 6397739 - 6397824
Alignment:
Q  245 ctacctctgcaactatataacagttttagtttcgtttgtattaatgtgatgagaattaaggtttcagtgttagaagcaatatatatag 332  Q
    |||||||||  |||||| | ||| | |||||| |||| ||||| ||||||||  | |||||||||||||||| |||||||||||||||    
T  6397739 ctacctctgtgactatagagcagctatagttttgtttctattactgtgatga--actaaggtttcagtgttacaagcaatatatatag 6397824  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 413
Target Start/End: Complemental strand, 41941045 - 41941005
Alignment:
Q  373 tgccttctttaatgtcttttatatatgagtcatatttcaac 413  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  41941045 tgccttctttaatgtcttgtatatatgagtcatacttcaac 41941005  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 7440940 - 7440824
Alignment:
Q  213 gatatttgttaatgtagtttggccaatgatatctacctctgcaactatataacagttttagtttcgtttgtattaatgtgatgagaattaaggtttcagt 312  Q
    |||||||||||| | |||| ||||||| |||| ||| ||||| |||||| | | ||| |||||| |||| ||||| ||||||  ||||||  ||||| ||    
T  7440940 gatatttgttaacgcagttcggccaattatatttacttctgcgactatagagcggttatagttttgtttttattattgtgat--gaattagagtttcggt 7440843  T
Q  313 gttagaagcaatatatata 331  Q
    |||| || |||||||||||    
T  7440842 gttacaaacaatatatata 7440824  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 43829 - 43870
Alignment:
Q  372 ttgccttctttaatgtcttttatatatgagtcatatttcaac 413  Q
    |||||||||| ||| |||| ||||||||||||||||||||||    
T  43829 ttgccttcttcaatatcttctatatatgagtcatatttcaac 43870  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 19340704 - 19340570
Alignment:
Q  196 aaagacaatgaacatatgatatttgttaatgtagtttggccaatgatatctacctctgcaactatataacagttttagtttcgtttgtattaatgtgatg 295  Q
    |||| ||||||||||   |||||| |||||| ||||||| ||||| |   ||||||||| |||||| | ||| | ||||||| ||| |||| || |||||    
T  19340704 aaaggcaatgaacattccatatttattaatgcagtttggtcaatggtgcttacctctgcgactatagagcagatatagtttcatttttattgatatgatg 19340605  T
Q  296 agaattaaggtttcagtgttagaagcaatatatatag 332  Q
    |  ||||  |||| ||||||| |||||||||||||||    
T  19340604 a--attagagtttaagtgttacaagcaatatatatag 19340570  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 316
Target Start/End: Original strand, 7237101 - 7237221
Alignment:
Q  196 aaagacaatgaacatatgatatttgttaatgtagtttggccaatgatatctacctctgcaactatataacagttttagtttcgtttgtattaatgtgatg 295  Q
    |||||||||||||| | |||||||||||  | |||| |||||||  | |||||||||||  ||||| | ||| | || || | ||| ||||| ||||||     
T  7237101 aaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctataattccatttttattactgtgata 7237200  T
Q  296 agaattaaggtttcagtgtta 316  Q
    ||||||| |||||| ||||||    
T  7237201 agaattagggtttcggtgtta 7237221  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 41715093 - 41715034
Alignment:
Q  271 tagtttcgtttgtattaatgtgatgagaattaaggtttcagtgttagaagcaatatatata 331  Q
    ||||| ||||| ||||| |||||||||||| | || |||||||||| ||||||||||||||    
T  41715093 tagttccgtttctattactgtgatgagaat-aggggttcagtgttacaagcaatatatata 41715034  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 38288563 - 38288603
Alignment:
Q  291 tgatgagaattaaggtttcagtgttagaagcaatatatata 331  Q
    |||||||||||| ||||||| ||||| ||||||||||||||    
T  38288563 tgatgagaattagggtttcaatgttataagcaatatatata 38288603  T

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