View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18823_low_5 (Length: 430)
Name: NF18823_low_5
Description: NF18823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18823_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 10 - 412
Target Start/End: Original strand, 6623987 - 6624387
Alignment:
| Q |
10 |
attatactaatgggaaatcaaattatgatatgtataatgaagtggcctgaataaaaattgacaggagccataattttattgtaggggcttactccttcat |
109 |
Q |
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| T |
6623987 |
attatactaatgggaaatcaaattatgatatgtataatgaagtggcctgaataaaaattgacaggagccagaattttattgtaggggcttactccttcat |
6624086 |
T |
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| Q |
110 |
attcactccaaggaggctttcccgtgaacatttcaataattgtacaacccaaactccaaatatcaattgcaaaagctagatcagagctgttatctttatg |
209 |
Q |
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| T |
6624087 |
attcactccaaggaggctttcccgtgaacatttcaataattgtacaacccaaactccaaatatcaattgcaaaagctagatcagagctgttatctttatg |
6624186 |
T |
|
| Q |
210 |
tatgaccgcttgcataagctgtatgagaagcaagtttgagtaaagaacacgtgatacataaaagagtaatgtagagttcaaatatatacaaatatacctc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||| |
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| T |
6624187 |
tatgaccgcttgcataagctgtatgagaagcaagtttgagtaaagaacacgtgatacataagagagtaatttagagttcaa--atatacaaatatacctc |
6624284 |
T |
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| Q |
310 |
tggagccatccaatatggacttcctttcaaagacagatcagcagaatgcccagttagctgtggaaacagagattccaagactattaataggcgcaaagta |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6624285 |
tggagccatccaatatggacttcctttcaaagacagatcagcagaatgcccagttagctgtggaaacagagattccaagactattaataggtgcaaagta |
6624384 |
T |
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| Q |
410 |
act |
412 |
Q |
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| T |
6624385 |
act |
6624387 |
T |
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