View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18823_low_6 (Length: 424)
Name: NF18823_low_6
Description: NF18823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18823_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 336
Target Start/End: Complemental strand, 11625786 - 11625471
Alignment:
| Q |
20 |
tgcctgactcatggtttcaagcttttggttacatgggagttgagggaaagtacgtgagtatttgctcaaaatgtgaaaggagcagcttttgtaaccctac |
119 |
Q |
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| T |
11625786 |
tgcctgactcatggtttcaagcttttggttacatgggagttgagggaaagtacgtgagtatttgctcaaaatgtgaaaggagcagtttttgtaaccctaa |
11625687 |
T |
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| Q |
120 |
gtgagaaagagagagtatatataggagagtgaacgtgagtgattgaatgtgtgaggttgttgtgatgatactgaatgagtcaatatatttagtggatgag |
219 |
Q |
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| T |
11625686 |
gtgagaatgagagggtatatataggaaagtgaacgtgagtgattgaatgtgtgagag-gttgtgatgatactgaatgagtcaatatatttagtggatgag |
11625588 |
T |
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| Q |
220 |
aaaaatgaggatttgcatgatatggcagttgagaatattatggaaaacaaatctccaagcgaatcacatgtagaatgaaaataaaatttgaaaccataca |
319 |
Q |
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| T |
11625587 |
aaaaatgaggatttgcatgatatggcagttgagaatattatggaaaacaaatctccaagtgaatcacatgtagaatgaaaataaaatttgaaaccataca |
11625488 |
T |
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| Q |
320 |
agaggtaaaaacaaatt |
336 |
Q |
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| T |
11625487 |
agaggtaaaaacaaatt |
11625471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 357 - 414
Target Start/End: Complemental strand, 11624606 - 11624549
Alignment:
| Q |
357 |
gtagtcaattaaacacttttacttagtaaaaacaaaaataaccgactaatctgatgat |
414 |
Q |
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| T |
11624606 |
gtagtcaattaaacacttttacttagtaaaaacaaaaataaccgactaatccgatgat |
11624549 |
T |
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