View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18823_low_7 (Length: 419)
Name: NF18823_low_7
Description: NF18823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18823_low_7 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 166 - 419
Target Start/End: Original strand, 37358436 - 37358692
Alignment:
| Q |
166 |
gatgtacattaatccaaagataacaacataaccagccaaacctgttatggcctttgttagcaaaaccaagtccctagccttacaaacagaccatgcttaa |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37358436 |
gatgtacattaatccaaagataacaacataaccagccaaacctgttatggcctttgttagcaaaaccaagtcccaagccttacaaacagaccatgcttaa |
37358535 |
T |
|
| Q |
266 |
atcaacaaagatgagaaatgtagattcacacccctacgttatactatataatttacattacaacgatagcaacacaaaaccagctgaacctgctatggcc |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37358536 |
atcaacaaagatgagaaatgtagattcacacccctacgttatattatataatttacattacaacgatagcaacacaaaaccagctgaacctgctatggcc |
37358635 |
T |
|
| Q |
366 |
aatcgggaagataaat---gaagatcatggagtgatggaacaatcgagatgacaaat |
419 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37358636 |
aatcgggaagataaatgaagaagatcatggagtgatggaacaatcgagatgacaaat |
37358692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 362
Target Start/End: Original strand, 3597231 - 3597289
Alignment:
| Q |
304 |
ttatactatataatttacattacaacgatagcaacacaaaaccagctgaacctgctatg |
362 |
Q |
| |
|
||||| ||||| ||||||||| ||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
3597231 |
ttatattatatgatttacattccaaagatagcaacacaaaaccagttgaacatgctatg |
3597289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 31909012 - 31909143
Alignment:
| Q |
12 |
gagatgaagaaagggctagttggaacctgcagaagccattgatgaaaaaactaaaaccctagattttgtagtaaaaagattagaagataagatattttgt |
111 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
31909012 |
gagatgaagaaagggctagttgaaacctggagaagccattgatgaaaaaactaaaaccctagattttatagtaaaaagattagaagataaaatattttgt |
31909111 |
T |
|
| Q |
112 |
tatatcgcaactactttgataactctactatt |
143 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |
|
|
| T |
31909112 |
tatatcgcaactacttagataactctactatt |
31909143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 26418917 - 26418843
Alignment:
| Q |
38 |
ctgcagaagccattgatg-aaaaaactaaaaccctagattttgtagtaaaaagattagaagataagatattttgt |
111 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26418917 |
ctgcagaagccattgatggaaaaaactaaaaccctagattttacagtaaaaagattagaagataagatattttgt |
26418843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University