View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18823_low_8 (Length: 387)
Name: NF18823_low_8
Description: NF18823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18823_low_8 |
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| [»] scaffold1157 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 370
Target Start/End: Original strand, 2624095 - 2624449
Alignment:
| Q |
20 |
tctgtgtccgtgtatcatagtctaattccattgaataaatgtcacgagtgtttcatagtcatatagcattaatttaacagtaccttttttcactacgttg |
119 |
Q |
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| T |
2624095 |
tctgtgtccgtgtatcatagtctaattccattgaataaatgtcacgagtgtttcatagtcatatagcattaatttaacagtaccttttttcactacgttg |
2624194 |
T |
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| Q |
120 |
ctataatgaagattatatgcagtgttcttattttgatcttgct-actgcagtttaacttggtcacaaaagaggatggatgcttctttcctcccaggtata |
218 |
Q |
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| T |
2624195 |
ctataatgaagattatatgcagtgttcttattttgatcttgctaactgcagcttaacttggtcacaaaagaggatggatgcttctttcctcccaggtata |
2624294 |
T |
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| Q |
219 |
actctcaactaatttgtttgacgtgttttctgtttcaga---tgctgaattttgaaattcttagtctaattaggtaataattagtgtcttatccactcat |
315 |
Q |
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| T |
2624295 |
actctcaactaatttgtttgatgtgttttctgtttcagatgctgctgaattttgaaattcttagtctaattaggtaataattagtgtcttatccactcat |
2624394 |
T |
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| Q |
316 |
ggtgtgttcattaggtaattcaaaaatataaaagccttatcttttctctactcac |
370 |
Q |
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| T |
2624395 |
ggtgtgttcattaggtaattcaaaaatatataagccttatcttttctctactcac |
2624449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 21872033 - 21871956
Alignment:
| Q |
104 |
ttttttcactacgttgctataatgaagattatatgcagtgttcttattttgatcttgct-actgcagtttaacttggt |
180 |
Q |
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| T |
21872033 |
ttttttcactacaatgttataatgaagattatatgttgtgttcttattttgatcttgctaactgcagcttaatttggt |
21871956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 16518049 - 16517998
Alignment:
| Q |
165 |
tgcagtttaacttggtcacaaaagaggatggatgcttctttcctcccaggta |
216 |
Q |
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| T |
16518049 |
tgcagattaacttggtcacaaaagcgtatggatgcttctttcctcccaggta |
16517998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 16526576 - 16526524
Alignment:
| Q |
165 |
tgcagtttaacttggtcacaaaagaggatggatgcttctttcctcccaggtat |
217 |
Q |
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| T |
16526576 |
tgcagattaacttggtcacaaaagcgtatggatgcttctttcctaccgggtat |
16526524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 16586669 - 16586625
Alignment:
| Q |
171 |
ttaacttggtcacaaaagaggatggatgcttctttcctcccaggt |
215 |
Q |
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| T |
16586669 |
ttaacttggtcacaaaagcgtatggatgcttctttcctaccaggt |
16586625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1157 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1157
Description:
Target: scaffold1157; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 974 - 1026
Alignment:
| Q |
165 |
tgcagtttaacttggtcacaaaagaggatggatgcttctttcctcccaggtat |
217 |
Q |
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| T |
974 |
tgcagattaacttggtcacaaaagcgtatggatgcttctttcctacctggtat |
1026 |
T |
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