View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18823_low_9 (Length: 381)
Name: NF18823_low_9
Description: NF18823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18823_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 364
Target Start/End: Complemental strand, 35771851 - 35771498
Alignment:
| Q |
11 |
cacagattgaggatatggttgaggtttcgatctatgttcaaagggtatgtccaatgtagtaaggtcagtgacaagagaaatgcagttaatagcactaaac |
110 |
Q |
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| T |
35771851 |
cacagattgaggatatggttgaggtttcgatctatgttcaaagggtatgtccaatgtagtaaggtcagtgacaagagaaatgcagttaatagcactaaac |
35771752 |
T |
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| Q |
111 |
aatcgcagtgacggtggaaagtcagacacagatacggacacgagtttcttgcagtagtctaaccttagttctttgaggttgttgagattttttatgtttg |
210 |
Q |
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| T |
35771751 |
aatcgcagtgacggtggaaagtcagacacagatacggacacgagtttcttgcagtagtctaaccttagttctttgaggttgttgagattttttatgtttg |
35771652 |
T |
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| Q |
211 |
gtatcaaactctcaacattgcttccacttagccttaagcgttgcaacgatgataataaaccaatgttgtcaggtagtgcctctaagttgcaacagttttc |
310 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35771651 |
gtgtcaaactctcaacattgcttccacttagccttaagcgttgcaacgatgataataaaccaatgttgtcaggtagtgcctttaagttgcaacagttttc |
35771552 |
T |
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| Q |
311 |
caaattcagcgaggttaaagttgattgccatgctttgatgttgaaatagagatt |
364 |
Q |
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| T |
35771551 |
caaattcagcgaggttaaagttgattgccatgctttgatgttgaaatagagatt |
35771498 |
T |
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