View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18824_low_1 (Length: 535)
Name: NF18824_low_1
Description: NF18824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18824_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 2 - 516
Target Start/End: Original strand, 34818614 - 34819128
Alignment:
| Q |
2 |
gagacatatgtccaattttagcatctgaattacaattatgcttcaaaattcaaataggattacaattccggtggaaaggactatgtgaccnnnnnnntaa |
101 |
Q |
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| T |
34818614 |
gagacagatgtccaattttagcatctgaattacaattatgcttcaaaattcaaataggatcacaattccggtggaaaggactatatgaccaaaaaaataa |
34818713 |
T |
|
| Q |
102 |
atgtactcattgattacattgccttgaattatatatatttaatgtaaagtcaacatatcacttaagtttgacatgtctagaactataactgcatagtaat |
201 |
Q |
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| T |
34818714 |
atgtactcattgattacattgccttgaattatatatatttaatgtaaagtcaacatatcacttaagtttgacatgtccagaactataactgcatagtaat |
34818813 |
T |
|
| Q |
202 |
gtcaccaatggttgcatgaaacgttgcatgaaatttcttcttgtgagcattggaaagacaaatttcttcttgatggagtatgatttctgtattgtttagg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34818814 |
gtcaccaatggttgcatgaaacgttgcatgaaatttcttcttgtgagcattggaaagacaaatttcttcttgatggagtatgatttctgtattgtttagg |
34818913 |
T |
|
| Q |
302 |
aagaagtcttgtgtctagtgccagctgcctggctgccatgagactaagttcattttttcttaggcaagtcttgaatggagtcatctcaagagggtggcaa |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34818914 |
aagaagtcttgtgtctagtgccagctgcctggctgccatgagactaagttcattttttcttaggcaagtcttgaatggagtcatctcaagagggtggcag |
34819013 |
T |
|
| Q |
402 |
ctactattccaaaatgttggatgctttcttctcttgactcttgtttttacctttcgagaggattggctcc-tgagtagggtattattcatgttcatgtgg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| |
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| T |
34819014 |
ctactattccaaaatgttggatgctttcttctcttgactcttgtttttacctttcgagaggattggctccttgagtagggtattgttcatgttca-gtgg |
34819112 |
T |
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| Q |
501 |
gggtggtttgacattg |
516 |
Q |
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|||||||||||||||| |
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| T |
34819113 |
gggtggtttgacattg |
34819128 |
T |
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