View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18824_low_2 (Length: 403)
Name: NF18824_low_2
Description: NF18824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18824_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 48924387 - 48924188
Alignment:
| Q |
18 |
ctttataatctgtgtgataaaagatagccataatttcttatactaagtcaattaatctcttttcttgaaaaagcgagaggaatacttttaagtaacctat |
117 |
Q |
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| T |
48924387 |
ctttataatctgtgtgataaaagatagccataatttcttatactaagtcaattaatctcttttcttgaaaaagcgagaggaatacttttaagtaacctat |
48924288 |
T |
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| Q |
118 |
gtgaagtgtgatgtatcgttgcatccttttctgaattgtatgttaggtgtttgataaaaaatgtctaatttctaacctctgagattgtcttcaaaacata |
217 |
Q |
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| T |
48924287 |
gtgaagtgtgatgtatcgttgcatccttttctgaattgtatgttaggtgtttgat--aaaatgtctaatttctaacctctgagattgtcttcaaaacata |
48924190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 233 - 393
Target Start/End: Complemental strand, 48924204 - 48924044
Alignment:
| Q |
233 |
tgtcttcaaaacataaatgaatgatattattattattagacttattttcgatggtaattcactcccaatggacatccgacatccattttccatatattca |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48924204 |
tgtcttcaaaacataaatgaatgatattattattattagacttattttcgatggtaattcactcccaatggacatccgacatccattttccatatattca |
48924105 |
T |
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| Q |
333 |
catatttagaatattaaagctatgtttgttgttttttgaatgctgaaagtgaagttctgtg |
393 |
Q |
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| T |
48924104 |
catatttagaatattaaagctatgtttgttgttttttgaatgctgaaagtgaagttctgtg |
48924044 |
T |
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