View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18825_high_2 (Length: 373)
Name: NF18825_high_2
Description: NF18825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18825_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 6664725 - 6665067
Alignment:
| Q |
18 |
acttccagtgaagaatattttgccccacttttgtagcagtagttgttcacagacatctcctctttctgctgcaaagcacagacttactggtgaggccatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6664725 |
acttccagtgaagaatattttgccccacttttgtagcagtagttgttcacagacatctcctctttctgctgcaaagcatagacttactggtgaggccatc |
6664824 |
T |
|
| Q |
118 |
ctaccacgagctaacatgttctccgtctctaccaaaactccctccataattggatcgttgagttctttcaaatgctgaagaagattattcatgattatgg |
217 |
Q |
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| T |
6664825 |
ctaccgcgagctaacatgttctccgtctctaccaaaactccctccataattggatcgttgagttctttcaaatgctgaagaagattattcatgattatgg |
6664924 |
T |
|
| Q |
218 |
ttccgtcgccaacattagcttgaacaatattcaaggtggtacggttcagcttcagcagttgacttaactgtttggttctaactgtaaaaggttgcagctc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6664925 |
ttccgtcgccaacattagcttgaacaatattcaaggtggtacggttcagcttcagcagttgacttaactgtttggttctaactgtaaaaggttgcagctc |
6665024 |
T |
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| Q |
318 |
atagcaaagtacaccaatgttgccacaaagttctcctgttttc |
360 |
Q |
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| T |
6665025 |
atagcaaagtacaccaatgtcgccacaaagttctcctgttttc |
6665067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 192 - 360
Target Start/End: Original strand, 46683714 - 46683885
Alignment:
| Q |
192 |
ctgaagaagattattcatgattatggttccgtcgccaacattagcttgaacaatattcaag---gtggtacggttcagcttcagcagttgacttaactgt |
288 |
Q |
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| T |
46683714 |
ctgaagaagattattcatgattatggttccgtcgccaacattagcttgaacaatattcaagaaggtggtacggttcagcctcaacagttgacttaatcgt |
46683813 |
T |
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| Q |
289 |
ttggttctaactgtaaaaggttgcagctcatagcaaagtacaccaatgttgccacaaagttctcctgttttc |
360 |
Q |
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|||||||||||||||||| ||||| ||| |||||||||||||||||| | |||||||||||||||||||||| |
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| T |
46683814 |
ttggttctaactgtaaaatgttgcggcttatagcaaagtacaccaatctcgccacaaagttctcctgttttc |
46683885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 71 - 194
Target Start/End: Original strand, 46683516 - 46683639
Alignment:
| Q |
71 |
catctcctctttctgctgcaaagcacagacttactggtgaggccatcctaccacgagctaacatgttctccgtctctaccaaaactccctccataattgg |
170 |
Q |
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||||||||||||||||||||||||| |||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46683516 |
catctcctctttctgctgcaaagcatagacttactggtaagtccatcctaccgcgagctaacatgttctccgtctctaccaaaactccctccataattgg |
46683615 |
T |
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| Q |
171 |
atcgttgagttctttcaaatgctg |
194 |
Q |
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|||||| || |||||||||||||| |
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| T |
46683616 |
atcgttcagctctttcaaatgctg |
46683639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 43304924 - 43305267
Alignment:
| Q |
18 |
acttccagtgaagaatattttgccccacttttgtagcagtagttgttcacagacatctcctctttctgctgcaaagcacagacttactggtgaggccatc |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || ||||| |
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| T |
43304924 |
acttctagtgaagaatattttgccccacttttgtagcagtagttgttcacagacatctcctctttctgctgcaaagcatagatttactggtaagtccatc |
43305023 |
T |
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| Q |
118 |
ctaccacgagctaacatgttctccgtctctaccaaaactccctccataattggatcgttgagttcttt-caaatgctgaagaagattattcatgattatg |
216 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43305024 |
ctaccgcgagctaacatgttctccgtctctaccaaaactccctccataattggatcgttgagttcttttcaaatgctgaagaagattattcatgattatg |
43305123 |
T |
|
| Q |
217 |
gttccgtcgccaacattagcttgaacaatattcaaggtggtacggttcagcttcagcagttgacttaactgtttggttctaactgtaaaaggttgcagct |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43305124 |
gttccgtcgccaacattagcttgaacaatattcaaggtggtacggttcagcttcaacagttgacttaactgtttggttctaactgtaaaaggttgcagct |
43305223 |
T |
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| Q |
317 |
catagcaaagtacaccaatgttgccacaaagttctcctgttttc |
360 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43305224 |
catagcaaagtacaccaatgtcgccacaaagttctcctgttttc |
43305267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 32402998 - 32402941
Alignment:
| Q |
22 |
ccagtgaagaatattttgccccacttttgtagcagtagttgttcacagacatctcctc |
79 |
Q |
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|||||||||||||||||| |||| |||||||| |||| |||||||||||||||||||| |
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|
| T |
32402998 |
ccagtgaagaatattttgtcccatttttgtagaagtacttgttcacagacatctcctc |
32402941 |
T |
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