View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18825_high_4 (Length: 249)
Name: NF18825_high_4
Description: NF18825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18825_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 3616948 - 3617046
Alignment:
| Q |
18 |
aacactcaccttacaaacattagatatgatattgacacgcagatattaataataatttttaagatcaactttcatgacacgtcattgtgagtgtagaac |
116 |
Q |
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| T |
3616948 |
aacactcaccttacaaacattagatatgatattgacacgcagacattaataataatttttaagatcaactttcatgacacgtcattgtgagtgtagaac |
3617046 |
T |
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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 3617115 - 3617178
Alignment:
| Q |
185 |
gtacactataattgttcttttgtttaaggaatatgtgttgttaatctattaattataattgattt |
249 |
Q |
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| T |
3617115 |
gtacactataattgttgtttt-tttaaggaatatgtgttgttaatctattaattataattgattt |
3617178 |
T |
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