View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18825_low_1 (Length: 616)
Name: NF18825_low_1
Description: NF18825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18825_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 20 - 606
Target Start/End: Original strand, 29038915 - 29039504
Alignment:
| Q |
20 |
gacgtaacttcaacagtatctgcatcagagtgatatagtgaagtgagcaacgtcacatagaacaaaatgaatcaatggaatgaacaataaagttatatga |
119 |
Q |
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| T |
29038915 |
gacgtaacttcaacagtatctgcatcagagtgatatagtgaagtgagcaacgtcacatagaacaaaatgaatcaatggaatgaacaataaagtaatatga |
29039014 |
T |
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| Q |
120 |
aagaattaattcatatacattgtcagtgtaaannnnnnn-acacatcaatcgattataaccattagttcatttaaaaacatttgacttcaatcacaacta |
218 |
Q |
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| T |
29039015 |
aagaattaattcatatacattgtcagtgtaaatgttttttacacgtcaatcaattataatcattagttcatttaaaaacatttgacttcaatcacaacta |
29039114 |
T |
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| Q |
219 |
ttgtcaatgatttgtcgacacctttttacaccgacagtgtatcaaagttaaagtctacaatgaaaatgcacattatgcataagtgcacaaaagtttcata |
318 |
Q |
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| T |
29039115 |
ttatcaatgatttgtcgacacctttttacaccgacagtgtatcaaagttaaagtctaaaatgaaaatgcacattatgcataagtgcacaaaagtttcata |
29039214 |
T |
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| Q |
319 |
ttttcttatattgctggtacatgtttgaatgtaaacatgaataatttcagtaagaaactagggaacagttcctctcccgtgaccgtgaaaattgcattga |
418 |
Q |
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| T |
29039215 |
ttttcttatattgttggtacatgtttgaatgtaaacatgaataatttcagtaagaaactagggaacagttcctctcccgtgaccgtgaaaattgcattgg |
29039314 |
T |
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| Q |
419 |
agggattctagtggaaatcttcatcgttcaatcaagtcttagt--ctcatcgactttgaccacatgcagtagagataaatgagcggttgaaattctactg |
516 |
Q |
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| T |
29039315 |
agggattctagtggaaatcttcatcgttcaatcaaatcttcatcgctcatcgactttgaccgcatgcagtagagataaataagcggtggaaattctactg |
29039414 |
T |
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| Q |
517 |
cagaaaatttccaccggagagaacccgttcccaactaagagacagttatgcaggttttatgattctaatgctcagctaagtatccctatg |
606 |
Q |
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| T |
29039415 |
cagaaaatttccaccggagagaacccgttcccaactaagagacagttatgcaggttttatgattctaatgctcagctaagtatccctatg |
29039504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 320 - 409
Target Start/End: Complemental strand, 29096826 - 29096738
Alignment:
| Q |
320 |
tttcttatattgctggtacatgtttgaatgtaaacatgaataatttcagtaagaaactagggaacagttcctctcccgtgaccgtgaaaa |
409 |
Q |
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| T |
29096826 |
tttcttatattgttggtacatgaatgaatgtaaacatgaat-agctcagtaagaaactagggaacaattcctctcccttgaacatgaaaa |
29096738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 1194247 - 1194293
Alignment:
| Q |
165 |
caatcgattataaccattagttcatttaaaaacatttgacttcaatc |
211 |
Q |
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| T |
1194247 |
caatcaattataactattggttcctttaaaaacatttgacttcaatc |
1194293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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