View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18825_low_2 (Length: 432)
Name: NF18825_low_2
Description: NF18825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18825_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 360
Target Start/End: Original strand, 24402188 - 24402535
Alignment:
| Q |
13 |
aatatcccgtcgaggtttaggattcctcaatgcttcgtaacagacaatggaactcaatttgtaaacaagtacatgagaaggctcctagaagaaccgagta |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24402188 |
aatatcctgtcgaggtttaggattcctcaatgcttcataacagacaatggaacccaatttgtaaacaagtacatgagaaggctcctagaagaaccgagta |
24402287 |
T |
|
| Q |
113 |
tcaagcaatattttacatatgtggaacacccgcaaacaaacagactggtcgagtccgccaaagggtcctcttcacatgaatgaagaaaaggcttgaagaa |
212 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24402288 |
tcaagcaacactttacatatgtggaacacccgcagaaaaacagactggtcgagtccgccaaagggtcctcttcacatgaatgaagaaaaggcttgaagaa |
24402387 |
T |
|
| Q |
213 |
tcgaatggcacctggttggagaagctcccccacgtcttgtgggcatactgaaccagtccgcatttgaccatgagtgaaacttcctttaggctaacctatg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24402388 |
tcgaatggcacctggttggagaagctcccccacgtcttgtgggcataccgaaccactccgcatttgaccatgggtgaaacttcctttaggctaacctatg |
24402487 |
T |
|
| Q |
313 |
ggtcaaaggtcgtgatccccgttgaagcgaaataattgagatggagaa |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24402488 |
ggtcaaaggtcgtgatccccgttgaagcgaaataattgagatggagaa |
24402535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University