View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18825_low_3 (Length: 382)
Name: NF18825_low_3
Description: NF18825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18825_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 40073306 - 40072948
Alignment:
| Q |
16 |
attcttcctcacaaacccataattacgaagcacttgattatcagcaaaattcaaagccctctccatctctttccaacaaacatcacccttataactaggg |
115 |
Q |
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| T |
40073306 |
attcttcctcacaaacccataattacgaagcacttgattatcagcaaaattcaaagccctctccatctctttccaacaaacatcacccttataactaggg |
40073207 |
T |
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| Q |
116 |
ttatgatccccactacatggctgacaccccgtaaaatgcttaacaaacggcctcctttcactccatttcaaataaggctctctcatttcaccataccaaa |
215 |
Q |
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| T |
40073206 |
ttatgatccccactacatggctgacaccccgtaaaatgcttaacaaacggcctcctttcactccatttcaaataaggctctctcatttcaccataccaaa |
40073107 |
T |
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| Q |
216 |
cactcaccttctctgaatgccttctccttaaaaccctagctttcttctctatcccatcatacttattttgtattccctctaacttccccattgtagcaat |
315 |
Q |
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| T |
40073106 |
cactcaccttctctgaatgccttctccttaaaaccctagctttcttctctatctcatcatacttattttgtattccctctaacttccccattgtagcaat |
40073007 |
T |
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| Q |
316 |
ccaataaccttctaaatcataaccttcctccaaaaatgtcttcgctccccatattcttc |
374 |
Q |
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| T |
40073006 |
ccaataaccttctaaatcataaccttcctccaaaaatgtcttcgctccccattttcttc |
40072948 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 13713859 - 13713897
Alignment:
| Q |
43 |
aagcacttgattatcagcaaaattcaaagccctctccat |
81 |
Q |
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| T |
13713859 |
aagcacttgattatctgcaaaattaaaagccctctccat |
13713897 |
T |
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