View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18826_high_5 (Length: 305)
Name: NF18826_high_5
Description: NF18826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18826_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 43837143 - 43837001
Alignment:
| Q |
18 |
gggggacacggaagaatgtttgaaaatgctcaagcaaggcatcatgatatatatttttccataatgtttcctttctaaaggttaactacttttctcccaa |
117 |
Q |
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| T |
43837143 |
gggggacacggaagaatgtttgaaaatgctcaagcaaggcatcctgatatatatttttccataatgtttcctttctaaaggttaactacttttctcccaa |
43837044 |
T |
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| Q |
118 |
aacattgatttgttctatagctcatctttggtgacttgatcct |
160 |
Q |
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| T |
43837043 |
aacattgatttgttctatagctcatctttggcgacttgatcct |
43837001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 39872087 - 39871952
Alignment:
| Q |
28 |
gaagaatgtttgaaaatgctcaagcaaggcatcatgatatatatttttccataatgtttcctttctaaaggttaac---tacttttctcccaaaacattg |
124 |
Q |
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|||||| |||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
39872087 |
gaagaaagtttgaaaatgctcaagcaaggcatcctaacatatatttttccataatgtttcctttctgaaggttaacaactacttttctcccaaaacattg |
39871988 |
T |
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| Q |
125 |
atttgttctatagctcatctttggtgacttgatcct |
160 |
Q |
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| T |
39871987 |
atttgttctatagctcatctttggcgacttgatcct |
39871952 |
T |
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