View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18826_high_6 (Length: 278)
Name: NF18826_high_6
Description: NF18826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18826_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 29680613 - 29680714
Alignment:
| Q |
41 |
agagatgagaactagactgagaaacacaataattaagtagtaaactgaaattcagagacaagaaattcatcaatatagagaattaagagcaaccatcttc |
140 |
Q |
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| T |
29680613 |
agagatgagaactagactgacaaacacaataattaagtagtaaactgaaattcagacacaagaaattcatcaatatagagaattaagagcaaccatcttc |
29680712 |
T |
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| Q |
141 |
tt |
142 |
Q |
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| T |
29680713 |
tt |
29680714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 29667222 - 29667353
Alignment:
| Q |
17 |
acaagaaatatatagaagagtgaaagagatgagaactagactgagaaacacaataa-----ttaagtagtaaactgaaattcagagacaagaaattcatc |
111 |
Q |
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| T |
29667222 |
acaagaaatatatagaagagtgagagagatgagaactagactgacaaacacaataatataattaagtagtaaactgaaattcagacacaagaaattcatc |
29667321 |
T |
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| Q |
112 |
aatatagagaattaagagc-aaccatcttctt |
142 |
Q |
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| T |
29667322 |
aatatagagaattaagagcaaaccatcttctt |
29667353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 29686396 - 29686487
Alignment:
| Q |
41 |
agagatgagaactagactgagaaacacaataattaagtagtaaactgaaattcagagacaagaaattcatcaatatagagaattaagagcaac |
133 |
Q |
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| T |
29686396 |
agagatgggaactagactgacaaacacaataattaagttgtaat-tgaaattcagacacaagaaatttatcaatatagagaattaagagcaac |
29686487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 29667481 - 29667545
Alignment:
| Q |
206 |
ctttcatttgcttgaaaattaaaacacagacgtagatataaatataatggttcaagttgatgatg |
270 |
Q |
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| T |
29667481 |
ctttcatttgcttgaaaattaaaacacagacgtgaatataaatataatggttcaagttgaagatg |
29667545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 29680841 - 29680905
Alignment:
| Q |
206 |
ctttcatttgcttgaaaattaaaacacagacgtagatataaatataatggttcaagttgatgatg |
270 |
Q |
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| T |
29680841 |
ctttcatttgcttgaaaattaaaacacagacctaaatataaatataatggttcaagttgaagatg |
29680905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 29686642 - 29686705
Alignment:
| Q |
207 |
tttcatttgcttgaaaattaaaacacagacgtagatataaatataatggttcaagttgatgatg |
270 |
Q |
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| T |
29686642 |
tttcatttgcttgaaaattaaaacacagacctagatataaatataacggtgcaagttgaagatg |
29686705 |
T |
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