View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18826_high_9 (Length: 225)
Name: NF18826_high_9
Description: NF18826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18826_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 5689804 - 5689990
Alignment:
| Q |
20 |
attaactaattggtaaaaccagcaatgacagcatgaggctcaagagccttagcagcaggagaagcttcaacagcagtagaaggctcaacatgcttaccaa |
119 |
Q |
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| T |
5689804 |
attaactaatttgtaaaaccagcaatgacagcatgaggctcaagagctttagcagcaggagaagcttcaacagcaggagaaggctcaacatgtttaccaa |
5689903 |
T |
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| Q |
120 |
gaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcactt |
206 |
Q |
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| T |
5689904 |
gaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcactt |
5689990 |
T |
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Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 25914500 - 25914662
Alignment:
| Q |
32 |
gtaaaaccagcaatgacagcatgaggctcaagagccttagcagcaggagaagcttcaacagcagtagaaggctcaacatgcttaccaagaagctcttgtg |
131 |
Q |
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| T |
25914500 |
gtaaaaccagcaatggtagcatgtggctcaagagctttagcagcaggagaagcttcaacattagggttaggctcaactggtttaccaagaagctcttgtg |
25914599 |
T |
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| Q |
132 |
gcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgat |
194 |
Q |
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| T |
25914600 |
gcaaatccttaatacccttcaaataaaatgtgtagaaaatcttaaatggaaaaacaatttgat |
25914662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 6792803 - 6792708
Alignment:
| Q |
100 |
aggctcaacatgcttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatg |
195 |
Q |
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|||||||| | | ||| |||||| ||| |||||||||||||||||||| | | ||||||||| || || ||||| |||||||| ||||||||||| |
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| T |
6792803 |
aggctcaataggattaacaagaaactcatgtggcaaatccttaatacccttaagataaaatgtgtaaaatatcttaaatggaaacacaatttgatg |
6792708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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