View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18826_low_1 (Length: 746)

Name: NF18826_low_1
Description: NF18826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18826_low_1
NF18826_low_1
[»] chr5 (1 HSPs)
chr5 (1-695)||(32163802-32164497)


Alignment Details
Target: chr5 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 695
Target Start/End: Complemental strand, 32164497 - 32163802
Alignment:
Q  1 agagatacttttaaacttccgagtggtggtaaacatgtgcttccatatggaggaaaacggtttctagaaatggtggtcacagaaaaccacgttctagtcg 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32164497 agagatacttttaaactttcgagtggtggtaaacatgtgcttccatatggaggaaaacggtttctagaaatggtggtcaccgaaaaccacgttctagtcg 32164398  T
Q  101 gagttttgatttaggggtttttattgcgggcctctagaggagttgatgcatcggctatgattcttggagagagcttctaccatagggtctccttagagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32164397 gagttttgatttaggggtttttattgcgggcctctagaggagttgatgcatcggctatgattcttggagagagcttctaccatagggtctccttagagag 32164298  T
Q  201 aaatcgaaaatgacaagggagaagaaacgagccatgtgtcacatccatggtcgcttaacatggtttgaggacaatggtcaaaattaagcaatgtctcatt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  32164297 aaatcgaaaatgacaagggagaagaaacgagccatgtgtcacatccatggtcacttaacatggtttgaggacaatggtcaaaattaagcagtgtctcatt 32164198  T
Q  301 tctaataatttgcctagtgagttacaattcacaagaaataagactatgtttaatttttggccattgcgcttttgagcatctcaacgacggagataataga 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |    
T  32164197 tctaataatttgcctagtgagttacaattcacaagaaataagactatgtttaatttttggccattgcgcttttgagcatctcaacgacggatgtaataaa 32164098  T
Q  401 gtaatgaacaacaacttctaaatgtaaatccaaaccaatcttaacttatttcagagggaaccattagattttttccttcctttttgtcagaatgcaggaa 500  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||| || ||    
T  32164097 gtaatgaacaacaacttctaaatgtaaatccaaaccaatcttaatttatttcagagggaaccattagtttttttccttcttttttgttagaatgtagaaa 32163998  T
Q  501 ggagtgga-nnnnnnnnnnnnnngatagaacatgggaatcaatagttaaaacaaaaatagttatatcaaatattaatccactctcgttttatctcatcaa 599  Q
    ||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32163997 ggagtggattttttttcttttttgatagaacatgggaatcaatagttaaaacaaaaatagttatatcaaatattaatccactctcgttttatctcatcaa 32163898  T
Q  600 gatttttatctaaatataaataaattttacccaaaaacaaaagaaatgcatattctagtcgtgaaaattatgaggtgcatatctaatactagaaaa 695  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32163897 gatttttatctaaatataaataatttttacccaaaaacaaaagaaatgcatattctagtcgtgaaaattatgaggtgcatatctaatactagaaaa 32163802  T

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