View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18826_low_2 (Length: 513)
Name: NF18826_low_2
Description: NF18826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18826_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 411
Target Start/End: Original strand, 39600626 - 39601010
Alignment:
| Q |
9 |
gagaagaaaatcgaatttgaggttgtccctgttaatgtcttggagggtgaacacaaagatcctgagtacctcaaattacaggttcatctttgtttagtac |
108 |
Q |
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| T |
39600626 |
gagaagaaaatcgaatttgaggttgtccctgttaatgtcttggagggtgaacacaaagatcctgagtacctcaaattacaggttcatctttgtttagtac |
39600725 |
T |
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| Q |
109 |
tatgctaaaagg--attcaaagt--ttattcattttctgactcatgaatgttttttgttcacaatctgcagccatttggaactgttcctgtaataaaaga |
204 |
Q |
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| T |
39600726 |
tatgctaaaagtttatttattttgattattcattttctgactcatgcatgttttttgttcataatctgcagccttttggaactgttcctgtaataaaaga |
39600825 |
T |
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| Q |
205 |
tggagactataccctttatggttaagacatcttgaccccatgtcatgctttttcaacttcttgtttttccctttttgttacttctcttatctacatattt |
304 |
Q |
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| T |
39600826 |
tggagactataccctttatggttaaaacatcttgaccccatgtcatactttttctacttcttgttttt----------------------ctacatattt |
39600903 |
T |
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| Q |
305 |
gatatggtcacagcttgtaaacactttaaacaagggttttacgttggttataaatataaaatatgacaaacaaataatagacatttgcataactaaattg |
404 |
Q |
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| T |
39600904 |
gatatggtcacagcttgtaaacactttaaacaagggttttatgttggttataaatataaaatatgacaaacaaattatagacatttgcataacttaattg |
39601003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 39611215 - 39611312
Alignment:
| Q |
158 |
tttgttcacaatctgcagccatttggaactgttcctgtaataaaagatggagactataccctttatggttaagacatcttgaccccatgtcatgctttt |
256 |
Q |
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| T |
39611215 |
tttgttcataatctgcagccatttggaaatgttcctgttattaaagatggagactataccctttatggttaa-acatcttgaccccatgtcatgctttt |
39611312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 440 - 513
Target Start/End: Original strand, 39601019 - 39601092
Alignment:
| Q |
440 |
tgttttcatctatttgtgcagaatctagggcaataatgagatactatgctgaaaaatatagatctcaaggggtt |
513 |
Q |
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| T |
39601019 |
tgttttcatctatttgtgcagaatctagggcaataatgagatactatgctgaaaaatatagatctcaaggggtt |
39601092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 39611067 - 39611160
Alignment:
| Q |
9 |
gagaagaaaatcgaatttgaggttgtccctgttaatgtcttggagggtgaacacaaagatcctgagtacctcaaattacaggttcatctttgtt |
102 |
Q |
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| T |
39611067 |
gagaaggaaatagaatttgaggttgtccctattaatgtcttgaagggtgaacacaaggatcctgagtacctcaaattacaggttcatgtttgtt |
39611160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 440 - 513
Target Start/End: Original strand, 39611840 - 39611913
Alignment:
| Q |
440 |
tgttttcatctatttgtgcagaatctagggcaataatgagatactatgctgaaaaatatagatctcaaggggtt |
513 |
Q |
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| T |
39611840 |
tgttttcatctatttgtgcagaatctagggcaataatgagatattatgcagaaaaatatagatctcaaggggtt |
39611913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 24646986 - 24646944
Alignment:
| Q |
348 |
ttggttataaatataaaatatgacaaacaaataatagacattt |
390 |
Q |
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| T |
24646986 |
ttggttataaatatataatatgacaaataaattatagacattt |
24646944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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