View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18826_low_3 (Length: 373)
Name: NF18826_low_3
Description: NF18826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18826_low_3 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 19641866 - 19642238
Alignment:
| Q |
1 |
attctaatggacgtaatatgttatcatctccagaaagttttgctattgaaggaaaacatgctgatattgctcttaagaatgcaggatcatctgaaaagaa |
100 |
Q |
| |
|
|||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19641866 |
attctaatcgacataatatgttatcatcttcagaaagttttgctattgaaggaaaacatgctgatattgctcttaagattgcaggatcatctgaaaagaa |
19641965 |
T |
|
| Q |
101 |
actcgatatttcaaagatggccgtatcaaccgtcaacttatgcaagaggttacagttgcagccagcagtttggtgatgaaagaagcaatgtttgttagag |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19641966 |
acttgatatttcaaagatggccgtatcaaccgtcaacttatgcaagaggttacagttgcagccagcagtttggtgatgaaagaagcaatgtttgttagag |
19642065 |
T |
|
| Q |
201 |
aatcagctaccaagttggtattttggtgtgtaatcatgtaatatagtcttgcatattgtagaatatgctattaaatcctaatgtatatagttttcagtgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
19642066 |
aatcagctaccaagttggtattttggtgtgtaatcatgtaatatagtcttgtatattgtagaatatgctattaagtcctaatgtatatagttttcaatgt |
19642165 |
T |
|
| Q |
301 |
tcttgctagcttgaatgaagaactggtatcttcttatctaatctaagtagacttgatgtagaatcttactgcc |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19642166 |
tcttgctagcttgaatgaagaactggtatcttcttatctaatctaagtagacttgatgtagaatcttactgcc |
19642238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University