View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18826_low_4 (Length: 371)
Name: NF18826_low_4
Description: NF18826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18826_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 33558228 - 33557887
Alignment:
| Q |
13 |
aatatatatgaaagatgtaattaccatgcatattatcatttcagtaccagcttccaaaaagaaagctctcctaccaaacttgtcaaccaaagccattgag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33558228 |
aatatatatgaaagatgtaattaccatgcatattatcatttcagtaccagcttccaaaaagaaagctctcctaccaaacttgtcaaccaaagccattgag |
33558129 |
T |
|
| Q |
113 |
atgagtgtagcaagaacaagagcaacacttgtaataacagatgaatatagagatgcaccagagccaaatccaattgtttggaaaataacaggagcataga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33558128 |
atgagtgtagcaagaacaagagcaacacttgtaataacagatgaatatagagatgcaccagagccaaatccaattgtttggaaaataacaggagcataga |
33558029 |
T |
|
| Q |
213 |
atagaatagagttgtttccagtaagttgttgaaatgctggaatacaaattgcaccaatgatgaattgaggtctattctttctcaaaaggagattctgaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33558028 |
atagaatagagttgtttccagtaagttgttgaaatgctggaatacaaattgcaccaatgatgaattgaggtctattctttctcaaaaggagattctgaaa |
33557929 |
T |
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| Q |
313 |
tggattcttaatagattttgcttctctgctagcctcaataag |
354 |
Q |
| |
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| T |
33557928 |
tggattcttaatagattttgcttctctgctagcctcaataag |
33557887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 33565445 - 33565104
Alignment:
| Q |
13 |
aatatatatgaaagatgtaattaccatgcatattatcatttcagtaccagcttccaaaaagaaagctctcctaccaaacttgtcaaccaaagccattgag |
112 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33565445 |
aatatatatgaaggatgtaattaccatgcatattatcatttcagtaccagcttccaaaaagaaagctctcctaccgaacttgtcaaccaaagccattgag |
33565346 |
T |
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| Q |
113 |
atgagtgtagcaagaacaagagcaacacttgtaataacagatgaatatagagatgcaccagagccaaatccaattgtttggaaaataacaggagcataga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33565345 |
atgagtgtagcaagaacaagagcaacacttgtaataacagatgaatatagagatgccccagagccaaatccaattgtttggaaaataacaggagcataga |
33565246 |
T |
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| Q |
213 |
atagaatagagttgtttccagtaagttgttgaaatgctggaatacaaattgcaccaatgatgaattgaggtctattctttctcaaaaggagattctgaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33565245 |
atagaatagagttgtttccagtaagttgttgaaatgctggaatacaaattgcaccaatgatgaattgaggtctattctttctcaaaaggagattctgaaa |
33565146 |
T |
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| Q |
313 |
tggattcttaatagattttgcttctctgctagcctcaataag |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33565145 |
tggattcttaatagattttgcttctctgctagcctcaataag |
33565104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 49 - 342
Target Start/End: Complemental strand, 43380558 - 43380265
Alignment:
| Q |
49 |
catttcagtaccagcttccaaaaagaaagctctcctaccaaacttgtcaaccaaagccattgagatgagtgtagcaagaacaagagcaacacttgtaata |
148 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||| | || ||||||||||| |||| ||| || || |
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| T |
43380558 |
catttcagcaccagcttccaaaaagaaagctctcctaccaaacttgtcaacataaaacattgagatcaaagtggcaagaacaagtgcaatactagtgatg |
43380459 |
T |
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| Q |
149 |
acagatgaatatagagatgcaccagagccaaatccaattgtttggaaaataacaggagcatagaatagaatagagttgtttccagtaagttgttgaaatg |
248 |
Q |
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||||| ||||| ||||||||| |||| |||||||||| |||||||||| ||||| |||||||| || || |||||||||||||| |||||||| |||| |
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| T |
43380458 |
acagaagaataaagagatgcagcagatccaaatccaagagtttggaaaaggacaggtgcatagaagaggatggagttgtttccagtcagttgttggaatg |
43380359 |
T |
|
| Q |
249 |
ctggaatacaaattgcaccaatgatgaattgaggtctattctttctcaaaaggagattctgaaatggattcttaatagattttgcttctctgct |
342 |
Q |
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| T |
43380358 |
caggaatagccaatgcaccaattacaaattgtggtctattctttcttaaaagaaggttctgaaatggattcttgatggcttgtgcttctctgct |
43380265 |
T |
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