View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18826_low_5 (Length: 305)
Name: NF18826_low_5
Description: NF18826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18826_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 56165704 - 56165404
Alignment:
| Q |
1 |
gtgtgtttgaccgaccagcacggtgtctttctaagcgcgaaatgaacacgcaacaatggagatnnnnnnnnnnnnctgaaggaagatgtttacaggctgc |
100 |
Q |
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| T |
56165704 |
gtgtgtttgaccgaccagcacggtgtctttctaagcgcgaaatgaacacgcaacaatggagataaaaaaaaaaaactgaaggaagatgtttacaggctgc |
56165605 |
T |
|
| Q |
101 |
aa-----------tgtcatgcaagcacatatggaaaagatggttgagaagaagaaaggtttctttaaatggaagaaacttgcttttagtaaaagcattgg |
189 |
Q |
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| T |
56165604 |
aaagtcagtgcaatgtcatgcaagcacatatggaaaagatggttgagaagaagaaaggtttctttaaatggaagaaacttgcttttagtaaaagcattgg |
56165505 |
T |
|
| Q |
190 |
tggcgagatggagaatgttgaacaacatgaagctgaaactgaatttcgatttggaaggcaaatcacaccaacagacttggtgtaaaccaatatgctatta |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
56165504 |
tggcgagatggagaatgttgaacaacatgaagctgaaactgaatttcgatttggaaggcaaaacacaccaacagacttggtgtaaaccaatatgctatta |
56165405 |
T |
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| Q |
290 |
a |
290 |
Q |
| |
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| |
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| T |
56165404 |
a |
56165404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 44263962 - 44263708
Alignment:
| Q |
1 |
gtgtgtttgaccgaccagcacggtgtctttctaagcgcgaaatgaacacgcaacaa-tggagatnnnnnnnnnnnnctgaaggaagatgtttacaggctg |
99 |
Q |
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||||||| |||| || ||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |
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| T |
44263962 |
gtgtgttggacccacaagcacggtgtctttctaagcgcgaaatgaacacacaacaaatggagataaaaaaa-----ctgaaggaagatgtttacaggctg |
44263868 |
T |
|
| Q |
100 |
ca-----------atgtcatgcaagcacatatggaaaagatggttgagaagaagaaaggtttctttaaatggaagaaacttgcttttagtaaaagcattg |
188 |
Q |
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| T |
44263867 |
cagagtcagtgcaatgtcatgcaagcacagatggacaagatggctgagaagaagaaaagtttcttcaaatggaagaaacttgcttttagtaaaagcat-- |
44263770 |
T |
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| Q |
189 |
gtggcgagatggagaatgttgaacaacatgaagctgaaactgaatttcgatttggaaggcaaa |
251 |
Q |
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| T |
44263769 |
-cggagagatggagaatgttgaacaagatgaagctgaaactgaatttggatttggaaggcaaa |
44263708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 44262911 - 44262870
Alignment:
| Q |
247 |
gcaaatcacaccaacagacttggtgtaaaccaatatgctatt |
288 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44262911 |
gcaaaacacaccaacagacttggtgtaaaccaatatgctatt |
44262870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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