View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18826_low_8 (Length: 258)
Name: NF18826_low_8
Description: NF18826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18826_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 50558630 - 50558380
Alignment:
| Q |
1 |
tttcagaaaggttctttattacgctttactaaaatgcttatcaaatttcagctttactgcaatacatgcgagaggttcttgtgtgatcggcttgtggaag |
100 |
Q |
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| T |
50558630 |
tttcagaaaggttctttattacactttactaaaatgcttatcaaatttcagctttactgcgatacctgcgagaggttcttgtgtgatcggcttgtggaag |
50558531 |
T |
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| Q |
101 |
gtgcctgtccaactcctgggtgtgagtatggttctgcacgaggtgaccaatgcgataagtgtggaaagcttctcaatcctacagagttgaagaatcctag |
200 |
Q |
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| T |
50558530 |
gtacctgtccaactcctgagtgtgagtatggttctgcacgaggtgaccaatgcgataagtgtggaaagcttctcaatcctacagagttgaagaatcctag |
50558431 |
T |
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| Q |
201 |
gtgcaaggtagcaaccctctccctaaatttttgctctatgtttctgtgctg |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50558430 |
gtgcaaggtagcaaccctctccctaaatttttgctctatgtttctgtgctg |
50558380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 29773236 - 29773068
Alignment:
| Q |
43 |
aaatttcagctttactgcaatacatgcgagaggttcttgtgtgatcggcttgtggaaggtgcctgtccaactcctgggtgtgagtatggttctgcacgag |
142 |
Q |
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|||||||||||||||||| |||||||| | |||||||| ||||| |||||||| ||| |||| |||| ||| ||||||||||||| |||||| ||| |
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| T |
29773236 |
aaatttcagctttactgcgatacatgcaaaaggttcttagccgatcgacttgtggagggtacctgcccaattccagggtgtgagtatgattctgccagag |
29773137 |
T |
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| Q |
143 |
gtgaccaatgcgataagtgtggaaagcttctcaatcctacagagttgaagaatcctaggtgcaaggtag |
211 |
Q |
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| || || || || || ||||| || ||||| ||||| ||||| ||||||| ||| | ||||||||||| |
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| T |
29773136 |
gggatcagtgtgagaactgtggcaaccttctaaatccgacagaattgaagattcccaagtgcaaggtag |
29773068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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