View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18827_high_11 (Length: 383)
Name: NF18827_high_11
Description: NF18827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18827_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 10835799 - 10836164
Alignment:
| Q |
1 |
tactaatagcaacaatatggattcaagcatttacaggaacaaattttgatttctcatcatactcatcaacaatgaaatccgtactcaaaatctcacaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10835799 |
tactaatagcaacaatatggattcaagcattcacaggaacaaattttgatttctcatcatactcatcaacaatgaaatccgtactcaaaatctcacaagt |
10835898 |
T |
|
| Q |
101 |
gcaacttaactacttagcaactgcaagtgacatgggtaaagtgtttggttggtcttctggtcttgctcttatgtatcttccaatctctcttgtcatgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10835899 |
gcaacttaactacttagcaactgcaagtgacatgggtaaagtgtttggttggtcttctggtcttgctcttatgtatcttccaatctctcttgtcatgttt |
10835998 |
T |
|
| Q |
201 |
attgctgcttcaatgggtcttgttggttatggtcttcaatttcttctcatcaataacctcatcactttgccctattttctggtaccttccttttccttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10835999 |
attgctgcttcaatgggtcttgttggttatggtcttcaatttcttctcatcaataacctcatcactttgccctattttctggtaccttccttttccttta |
10836098 |
T |
|
| Q |
301 |
ccccatatttctca--tttcacttcnnnnnnnnnngtttgtttagtctttattaattaattaatggtt |
366 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10836099 |
ccccatatttctcatttttcagttc--ttttttttgtttgtttagtctttattaattaattaatggtt |
10836164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 32206903 - 32206967
Alignment:
| Q |
3 |
ctaatagcaacaatatggattcaagcatttacaggaacaaattttgatttctcatcatactcatc |
67 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||| ||||| ||||| ||||||||||| ||||| |
|
|
| T |
32206903 |
ctaatagcaacaatttggatacaagcattcacagggacaaactttgacttctcatcatattcatc |
32206967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 284
Target Start/End: Complemental strand, 30354924 - 30354784
Alignment:
| Q |
144 |
tttggttggtcttctggtcttgctcttatgtatcttccaatctctcttgtcatgtttattgctgcttcaatgggtcttgttggttatggtcttcaatttc |
243 |
Q |
| |
|
|||||||||||||||||| | || |||||| ||||||| | || |||| ||||| |||||||| | ||||| || ||||||||||| |||||| | |
|
|
| T |
30354924 |
tttggttggtcttctggtttagcgcttatgcatcttcctgtttcggttgttatgttcattgctgcgtttatggggtttcttggttatggtgttcaatggc |
30354825 |
T |
|
| Q |
244 |
ttctcatcaataacctcatcactttgccctattttctggta |
284 |
Q |
| |
|
||||||| ||| | |||| ||||||| |||||||||||| |
|
|
| T |
30354824 |
ttctcattaatcatttcatttctttgccttattttctggta |
30354784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 30355056 - 30355016
Alignment:
| Q |
12 |
acaatatggattcaagcatttacaggaacaaattttgattt |
52 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
30355056 |
acaatatggattcaagcatttacagggacgaatttcgattt |
30355016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University