View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18827_high_4 (Length: 504)
Name: NF18827_high_4
Description: NF18827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18827_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 203 - 486
Target Start/End: Complemental strand, 52592800 - 52592517
Alignment:
| Q |
203 |
taatagcccaatatagtctataaactaatgccatctttatgtttttggtcttgtttaataacttaggtaatcttccccacctccaaaaaccgtattttgt |
302 |
Q |
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| T |
52592800 |
taatagcccaatatagtctataaactaatgccatctttatgtttttggtcttgtttaataacttaggtaatcttccccacctccgaaaaccgtattttgt |
52592701 |
T |
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| Q |
303 |
attccataataatcataatgtgcttttgattgaaattcattgttatcagaatagaagatgaaatattgcataatcatcgccaagacaattgtttcccatt |
402 |
Q |
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| T |
52592700 |
attccataataatcataatgtgcttttgattgaaattcattgttatcagaatagaagatgaaatattgcataatcatcgccaagacaattgtttcccatt |
52592601 |
T |
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| Q |
403 |
gaaaaagatatcaagctgatttcattgttgtgaagagaccagaagtgaggttcttgttcccaacaagtgctgatcttgtcttgt |
486 |
Q |
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| T |
52592600 |
gaaaaagatatcaagctgatttcattgttgtgaagagaccagaagtgaggttcttgttcccaacaagtgctgatcttgtcttgt |
52592517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 52592988 - 52592866
Alignment:
| Q |
13 |
aatatcaaaaacccggatttgaataaatgataaccaaacagggaacaatccattatacaaataaattatgttcttatatgcttgaaatgctttgtttttt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
52592988 |
aatatcaaaaacccggatttgaataaatgataaccaaacagggaacaatccattatacaaataaattctgttcttacatgcttgaaatgctttgtttttt |
52592889 |
T |
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| Q |
113 |
atggttgaaattacactggtcac |
135 |
Q |
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| T |
52592888 |
atggttgaaattacactggtcac |
52592866 |
T |
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