View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18827_high_5 (Length: 483)
Name: NF18827_high_5
Description: NF18827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18827_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 473
Target Start/End: Original strand, 29770738 - 29771195
Alignment:
| Q |
16 |
ttcatcacactcaaaacaaagggaacacgttagacaaaaatagtgagttataagtccaaatgccatatccaaaaaa-tatagtaagttagcaacatgttc |
114 |
Q |
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| T |
29770738 |
ttcatcacactcaaaacaaagggaacacgttagacaaaaatagtgagttatacgtccaaatgccatatccaaaaaaatatagtaagttagcaacatgttc |
29770837 |
T |
|
| Q |
115 |
aacttcaacaaggttatgatatgctgatctagctttgtgaccatagttttatcaaaactaacttgcgagcaagttcattaaacttatgagctagcttgtc |
214 |
Q |
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| T |
29770838 |
aacttcaacaaggttatgatatgctgatctagctttgtgaccctagttttatcaaa-ctaacttgcgagcaagttcattaaacttatgagctaacctgtc |
29770936 |
T |
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| Q |
215 |
ccgnnnnnnnnnnnnn-----aatttaaaatagtttaatcaaacggataggctttgtttgtgataaatagtttaatttaaaaacgacattatagtactta |
309 |
Q |
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| T |
29770937 |
cttttttttttttttttttttaatttaaaatagtttaatcaaac--atatgctttgtttgtgataagtagtttactttaaaaacgacattatagtactta |
29771034 |
T |
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| Q |
310 |
attaattattatattttgaagaaagtactttattaattaatgtcttgtaatatatctcaagacacataagttttctagattatatatcaaggtgatgtaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29771035 |
attaattattatattttgaagaaagtactttattaattaatgtcttgtaatatatctcaagacacataagttttctagattatatatcaaggtgatgtaa |
29771134 |
T |
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| Q |
410 |
tacaattgatagaaaacctaattcataactactccattataataaccccattttctcctctgtg |
473 |
Q |
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| T |
29771135 |
tacaattgatagaaaacctaattcataactactccatt---ataaccccattttctcctctgtg |
29771195 |
T |
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