View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18827_high_6 (Length: 461)
Name: NF18827_high_6
Description: NF18827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18827_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 156 - 388
Target Start/End: Complemental strand, 23254143 - 23253910
Alignment:
| Q |
156 |
ataagttaacatgaacctttaattaattgta-gtaacttattcataatttttcaaaaatatcctataaattatcgtaaaatattttgtttaaatcatgat |
254 |
Q |
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| T |
23254143 |
ataagttaacgtgaacctttaattaattgtaagtaacttattcataatttttcaaaaatatggtataatttatcgtaaaatattttgtttaaatcatgat |
23254044 |
T |
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| Q |
255 |
agagaaaacatgttgttgacggcattgtaagaaaatggcgccactgaactctctttcgaaagagtatccactcatcgactctaacttccaaactttctgc |
354 |
Q |
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| T |
23254043 |
agagaaaacatgttgttgacggcattgtaagaaaatggcaccactgaactctctttcgaaagagtatccactcatcgactctaacttccaaactttctgc |
23253944 |
T |
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| Q |
355 |
gcttcccacgccatttattctggtcgttcctctc |
388 |
Q |
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| T |
23253943 |
gcttcccacgccatttattctggtcgttcctctc |
23253910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 23254261 - 23254219
Alignment:
| Q |
58 |
caacctttctttcttctgtgacagttccaaacagaggaatcac |
100 |
Q |
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| T |
23254261 |
caaccattatttcttctgtgacagtttcaaacagaggaatcac |
23254219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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