View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18827_low_10 (Length: 395)
Name: NF18827_low_10
Description: NF18827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18827_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 45018521 - 45018761
Alignment:
| Q |
1 |
cctccaatgtttacattgtgtcacacaaaacaactgaaaacatgtcatggactatatataaggccctatgcaagaagggaggatgcatatgcaatgagac |
100 |
Q |
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| T |
45018521 |
cctccaatgtttacattgtgtcacacaaaacaactgaaaacatgtcatggactata----aggccctatgcaagaagggaggatgcatatgcaatgagac |
45018616 |
T |
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| Q |
101 |
atgtaagaaaatggtctgtcaaagctagccaccaccaccaagttccacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggata |
200 |
Q |
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| T |
45018617 |
atgtaagaaaatggtctgtcaaagctagccac---caccaagttccacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggata |
45018713 |
T |
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| Q |
201 |
cactggaaaccatttccatgaattcagtgacattatcattccactgtt |
248 |
Q |
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| T |
45018714 |
cactggaaaccatttccatgaattcagtgacattatcattccactgtt |
45018761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 135 - 383
Target Start/End: Complemental strand, 45012472 - 45012224
Alignment:
| Q |
135 |
ccaccaagttccacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgacatt |
234 |
Q |
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| T |
45012472 |
ccaccaagtctcacagtgcaccaaataccacagcattccagcagtaatattctctacggcaggatacactggaaaccatttccatgaattcagtgacatt |
45012373 |
T |
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| Q |
235 |
atcattccactgtttttgacgtgcagaaaatttaatggacaagtgcaacttatcataactgataacaagtcttggtggatttccaaacaccaagcatttc |
334 |
Q |
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| T |
45012372 |
gtcattccactgtttttgacttgtagacaatttaatggacaagtacagcttatcataactgataagaagtcttggtggatttccaaacaccaagcatttc |
45012273 |
T |
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| Q |
335 |
ttaaaaagctttccaactatgagattatggatattgatagagatgatga |
383 |
Q |
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| T |
45012272 |
ttaaaaaactgtctaattatgaaattattgacattgatagagatgatga |
45012224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 146 - 383
Target Start/End: Complemental strand, 3173006 - 3172769
Alignment:
| Q |
146 |
cacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgacattatcattccact |
245 |
Q |
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| T |
3173006 |
cacagtgcaccaaatatcacagcattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgatattgtcattccact |
3172907 |
T |
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| Q |
246 |
gtttttgacgtgcagaaaatttaatggacaagtgcaacttatcataactgataacaagtcttggtggatttccaaacaccaagcatttcttaaaaagctt |
345 |
Q |
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| T |
3172906 |
gtttttgacttgtagactatttaatggacaagtacagcttatcataactgataagaagtcttggtggatttccaaacaccaagcgtttcttaaaaaactg |
3172807 |
T |
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| Q |
346 |
tccaactatgagattatggatattgatagagatgatga |
383 |
Q |
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|| |||||||| ||||| || ||||| ||||||||||| |
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| T |
3172806 |
tctaactatgaaattattgacattgacagagatgatga |
3172769 |
T |
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