View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18827_low_12 (Length: 387)
Name: NF18827_low_12
Description: NF18827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18827_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 218 - 372
Target Start/End: Original strand, 45829465 - 45829619
Alignment:
| Q |
218 |
atcgcctacagttccggccacctcaccggaaaccaccgcgataacagtgaaagactcctaacacaccactgctaatttcggaatcattcaatctgttggt |
317 |
Q |
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| T |
45829465 |
atcgcctacagttccggccacctcaccggaaaccaccgcgataacagtgaaagactcctaacacaccactgctaatatcggaatcattcaatcctttggt |
45829564 |
T |
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| Q |
318 |
ttatacgacacgctccgtcgcggctaggagaggtgggatgatttcttctcctttt |
372 |
Q |
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| T |
45829565 |
ttatatgacacgctccgtcgcggctaggagagctgggatgatttcttctcctttt |
45829619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 45824713 - 45824776
Alignment:
| Q |
24 |
ccaatcaattcagattcaaatgctattagtaaatgttgttccatttcctatgtcatttacaacc |
87 |
Q |
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| T |
45824713 |
ccaatcagttcagattcaaatgctattagtaaatgttgttccatttcctatgtcatttacaacc |
45824776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 361
Target Start/End: Complemental strand, 13096128 - 13096087
Alignment:
| Q |
320 |
atacgacacgctccgtcgcggctaggagaggtgggatgattt |
361 |
Q |
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| T |
13096128 |
atacgacacgctccgtcgcggctagtagcggtgggctgattt |
13096087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 22141820 - 22141762
Alignment:
| Q |
314 |
tggtttatacgacacgctccgtcgcggctaggagaggtgggatgatttcttctcctttt |
372 |
Q |
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| T |
22141820 |
tggtttatacgacacgcaccgtcgcggctaggagaggtgggctgatttcttctcctttt |
22141762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 14866595 - 14866532
Alignment:
| Q |
24 |
ccaatcaattcagattcaaatgctattagtaaatgttgttccatttcctatgtcatttacaacc |
87 |
Q |
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||||||| |||||||||||||| |||| |||||||| ||||||||||||| |||||||||||| |
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| T |
14866595 |
ccaatcagttcagattcaaatgtgattaataaatgtttttccatttcctatatcatttacaacc |
14866532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 43046153 - 43046094
Alignment:
| Q |
25 |
caatcaattcagattcaaatgctattagtaaatgttgttccatttcctatgtcatttaca |
84 |
Q |
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| T |
43046153 |
caatcagttcaaattcaaatgttgttaataaatgttgttccatttcctatgtgatttaca |
43046094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 43045846 - 43045793
Alignment:
| Q |
308 |
atctgttggtttatacgacacgctccgtcgcggctaggagaggtgggatgattt |
361 |
Q |
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|||||||||||| ||||||||||||||| |||| ||||| |||||| |||||| |
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| T |
43045846 |
atctgttggtttctacgacacgctccgttgcggttaggaacggtgggctgattt |
43045793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 27277411 - 27277363
Alignment:
| Q |
218 |
atcgcctacagttccggccacctcaccggaaaccaccgcgataacagtg |
266 |
Q |
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| T |
27277411 |
atcgcctcgagttccggccacctcaccggaaacctccgcgataacagtg |
27277363 |
T |
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