View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18827_low_14 (Length: 361)

Name: NF18827_low_14
Description: NF18827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18827_low_14
NF18827_low_14
[»] chr7 (4 HSPs)
chr7 (127-269)||(13603807-13603949)
chr7 (268-344)||(13604186-13604261)
chr7 (268-344)||(7892629-7892705)
chr7 (268-344)||(22005853-22005929)
[»] chr5 (3 HSPs)
chr5 (127-268)||(21122644-21122781)
chr5 (132-268)||(1673447-1673578)
chr5 (268-344)||(21122330-21122406)
[»] chr3 (9 HSPs)
chr3 (16-184)||(14458248-14458417)
chr3 (268-344)||(12807586-12807662)
chr3 (16-148)||(12807332-12807464)
chr3 (268-339)||(14458486-14458557)
chr3 (268-344)||(36092578-36092654)
chr3 (150-184)||(12807483-12807517)
chr3 (19-63)||(12807086-12807130)
chr3 (19-63)||(14458002-14458046)
chr3 (268-344)||(26950393-26950469)
[»] scaffold0361 (1 HSPs)
scaffold0361 (16-58)||(8711-8753)
[»] chr6 (1 HSPs)
chr6 (287-344)||(6717256-6717313)
[»] chr4 (4 HSPs)
chr4 (287-344)||(34337592-34337649)
chr4 (303-344)||(47964112-47964153)
chr4 (268-345)||(52681605-52681682)
chr4 (268-344)||(41860648-41860724)
[»] scaffold0252 (1 HSPs)
scaffold0252 (287-344)||(24136-24193)
[»] chr8 (3 HSPs)
chr8 (287-344)||(23098615-23098672)
chr8 (287-344)||(27064393-27064450)
chr8 (268-344)||(14995255-14995331)
[»] chr2 (3 HSPs)
chr2 (268-344)||(26454780-26454856)
chr2 (268-344)||(13907135-13907211)
chr2 (268-344)||(40604617-40604693)
[»] chr1 (2 HSPs)
chr1 (268-338)||(52589300-52589369)
chr1 (19-63)||(50290996-50291040)


Alignment Details
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 127 - 269
Target Start/End: Original strand, 13603807 - 13603949
Alignment:
Q  127 tatagactcttcgaacacaaaagaagcatcatcactttga-tctgtcaatgaaagaatagcatatttaatatcatttatggttagtaaccaaaagtaatc 225  Q
    ||||||||| ||||||| | || ||| ||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  13603807 tatagactcctcgaacaaagaa-aagtatcatcactttgaatctgtcaatgaaagaatggcatatttaatatcatatatggttagtaaccaaaagtaatc 13603905  T
Q  226 cagaaatgatattcttatgaagattgtttaaaaaacataatcaa 269  Q
    |||||||| |||||||||| |||||||||| |||||| ||||||    
T  13603906 cagaaatgctattcttatgcagattgtttataaaacagaatcaa 13603949  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 344
Target Start/End: Original strand, 13604186 - 13604261
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||    
T  13604186 aaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcataaa-tgtaaaatcaacaaac 13604261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 7892705 - 7892629
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||| | ||||| | |||||||||||    
T  7892705 aaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaacaaac 7892629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 22005929 - 22005853
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||| | ||||| | |||||| ||||    
T  22005929 aaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaaaaaac 22005853  T

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Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 127 - 268
Target Start/End: Complemental strand, 21122781 - 21122644
Alignment:
Q  127 tatagactcttcgaacacaaaagaagcatcatcactttgatctgtcaatgaaagaatagcatatttaatatcatttatggttagtaaccaaaagtaatcc 226  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||    |||||||||| ||||||| |||||||||||||||||    
T  21122781 tatagactcttcgaacacaaaaaaaacatcatcactttgatctgtcaatgaaagaaatgc----ttaatatcatatatggtttgtaaccaaaagtaatcc 21122686  T
Q  227 agaaatgatattcttatgaagattgtttaaaaaacataatca 268  Q
    ||||||| |||| ||||||||||||||||||| ||| |||||    
T  21122685 agaaatgctatttttatgaagattgtttaaaagacagaatca 21122644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 132 - 268
Target Start/End: Original strand, 1673447 - 1673578
Alignment:
Q  132 actcttcgaacacaaaagaagcatcatcactttgatctgtcaatgaaagaatagcatatttaatatcatttatggttagtaaccaaaagtaatccagaaa 231  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||  ||    |||||||||| ||||||||||||||||||||||||||||||    
T  1673447 actcttcgaacacaaaa-aagtatcatcactttgatctgtcaatgaaagaaatgc----ttaatatcatatatggttagtaaccaaaagtaatccagaaa 1673541  T
Q  232 tgatattcttatgaagattgtttaaaaaacataatca 268  Q
    || |||| ||||||||||||||||||||||| |||||    
T  1673542 tgctatttttatgaagattgtttaaaaaacagaatca 1673578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 21122406 - 21122330
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||| |||||||||||    
T  21122406 aaataaaattaaacaaatgctattactcttatcttaacccctaatttaaaaattcatagaccgtaaaatcaacaaac 21122330  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 14458248 - 14458417
Alignment:
Q  16 atccttccactaacggatcaacaaatccatcaccttacaacatatacacttacatacattaaagatgtccaactccatgttcgaagtttgcaacttcaac 115  Q
    ||||||||||||||  | ||||||||||| || ||||| |||| |||||  |||||||||||||||||||||||||||||   ||||||||| |||| |     
T  14458248 atccttccactaacataccaacaaatccaacaacttacgacatttacacaaacatacattaaagatgtccaactccatgtggtaagtttgcagcttcgat 14458347  T
Q  116 aggttcattcatatagactcttcgaacac-aaaagaagcatcatcactttgatctgtcaatgaaagaata 184  Q
    |||||| ||  |||||||||||  ||||| |||| |||||||||||||||||||||||||||||||||||    
T  14458348 aggttcgtttgtatagactctttcaacacaaaaaaaagcatcatcactttgatctgtcaatgaaagaata 14458417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 268 - 344
Target Start/End: Original strand, 12807586 - 12807662
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  12807586 aaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcataaactgtaaaatcaacaaac 12807662  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 12807332 - 12807464
Alignment:
Q  16 atccttccactaacggatcaacaaatccatcaccttacaacatatacacttacatacattaaagatgtccaactccatgttcgaagtttgcaacttcaac 115  Q
    ||||||||||||||  ||||||||||||| || ||||||| || |||||  |||||||||||||||||||||||||||||   ||||||||| |||| ||    
T  12807332 atccttccactaacatatcaacaaatccaacaacttacaatatttacacaaacatacattaaagatgtccaactccatgtggtaagtttgcagcttcgac 12807431  T
Q  116 aggttcattcatatagactcttcgaacacaaaa 148  Q
    |||||| ||  |||||||| || ||||||||||    
T  12807432 aggttcgtttgtatagactttttgaacacaaaa 12807464  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 268 - 339
Target Start/End: Original strand, 14458486 - 14458557
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaa 339  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  14458486 aaataaaattaaacaaatgctattactcttatcttaactcctaatttgaaaattcataaactgtaaaatcaa 14458557  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 344
Target Start/End: Original strand, 36092578 - 36092654
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    |||||||| ||||||||||||  |||||||||   |||||| ||||| ||||||||| ||||| | |||||||||||    
T  36092578 aaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcatgaactgcaaaatcaacaaac 36092654  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 12807483 - 12807517
Alignment:
Q  150 aagcatcatcactttgatctgtcaatgaaagaata 184  Q
    |||||||||||||||||| ||||||||||||||||    
T  12807483 aagcatcatcactttgatatgtcaatgaaagaata 12807517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 12807086 - 12807130
Alignment:
Q  19 cttccactaacggatcaacaaatccatcaccttacaacatataca 63  Q
    ||||| |||||  ||||||||||||||||||||||||||| ||||    
T  12807086 cttcctctaacacatcaacaaatccatcaccttacaacatttaca 12807130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 14458002 - 14458046
Alignment:
Q  19 cttccactaacggatcaacaaatccatcaccttacaacatataca 63  Q
    ||||| |||||  ||||||||||||||||||||||||||| ||||    
T  14458002 cttcctctaacacatcaacaaatccatcaccttacaacatttaca 14458046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 26950469 - 26950393
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    |||||||| ||||||||||||  |||||||||   |||||| ||||| ||||||| | ||||| | |||||||||||    
T  26950469 aaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaac 26950393  T

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Target: scaffold0361 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 8711 - 8753
Alignment:
Q  16 atccttccactaacggatcaacaaatccatcaccttacaacat 58  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8711 atccttccactaacggatcaacaaatccatcaccttacaacat 8753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 6717313 - 6717256
Alignment:
Q  287 ctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    |||||| |||||| |||| ||||||||| ||||||||||||||||| |||||||||||    
T  6717313 ctattaatcttattttaaaccctaatttgaaaattcataaactgtaaaatcaacaaac 6717256  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 34337649 - 34337592
Alignment:
Q  287 ctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    |||||| |||||| |||| ||||||||| ||||||||||||||||| |||||||||||    
T  34337649 ctattaatcttattttaaaccctaatttgaaaattcataaactgtaaaatcaacaaac 34337592  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 47964112 - 47964153
Alignment:
Q  303 aacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  47964112 aacccctaatttgaaaattcataaactgtaaaatcaacaaac 47964153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 52681682 - 52681605
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaact 345  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||| | || || | ||||||||||||    
T  52681682 aaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaattgcaaaatcaacaaact 52681605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 344
Target Start/End: Original strand, 41860648 - 41860724
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    |||||||| ||||||||||||  |||||||||   |||||| ||||| ||||||| | ||||| | |||||||||||    
T  41860648 aaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaac 41860724  T

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Target: scaffold0252 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 24193 - 24136
Alignment:
Q  287 ctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    |||||| |||||| |||| ||||||||| |||||||||||||| || |||||||||||    
T  24193 ctattaatcttattttaaaccctaatttgaaaattcataaactataaaatcaacaaac 24136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 23098672 - 23098615
Alignment:
Q  287 ctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    |||||| |||||| |||| ||||||||| |||||||||||| |||| |||||||||||    
T  23098672 ctattaatcttattttaaaccctaatttgaaaattcataaattgtaaaatcaacaaac 23098615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 27064393 - 27064450
Alignment:
Q  287 ctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    |||||| |||||| |||| ||||||||| |||||||||||| |||| |||||||||||    
T  27064393 ctattaatcttattttaaaccctaatttgaaaattcataaattgtaaaatcaacaaac 27064450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 344
Target Start/End: Original strand, 14995255 - 14995331
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    |||||||| ||||||||||||  |||||||||   |||||| ||||| ||||||| | ||||| | |||||||||||    
T  14995255 aaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaac 14995331  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 26454856 - 26454780
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||| | ||||| | |||||||||||    
T  26454856 aaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaacaaac 26454780  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 13907211 - 13907135
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||| | ||||| | |||||| ||||    
T  13907211 aaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaaaaaac 13907135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 40604693 - 40604617
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 344  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||  | ||||| | |||||||||||    
T  40604693 aaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaatttctgaactgcaaaatcaacaaac 40604617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 338
Target Start/End: Complemental strand, 52589369 - 52589300
Alignment:
Q  268 aaatcaaattaaacaaatgctattactcttatcttaacccctaattt-caaaattcataaactgtataatca 338  Q
    ||||||||||||||||||| |||||||||||  |||||||  |||||  ||||||||||||||| |||||||    
T  52589369 aaatcaaattaaacaaatgttattactctta--ttaaccctcaatttgaaaaattcataaactgcataatca 52589300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 50291040 - 50290996
Alignment:
Q  19 cttccactaacggatcaacaaatccatcaccttacaacatataca 63  Q
    ||||| |||||  ||||||||||||||||||||||||||| ||||    
T  50291040 cttcctctaacacatcaacaaatccatcaccttacaacatttaca 50290996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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