View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18827_low_18 (Length: 305)
Name: NF18827_low_18
Description: NF18827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18827_low_18 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 36328548 - 36328247
Alignment:
| Q |
13 |
aatatgctcaataacccatgagataaataataggcggccacgtatataatatcgtaacaaattaagtgtagtttgtttaatttgttaccattaattttag |
112 |
Q |
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| T |
36328548 |
aatatgctcaataacccatgagataaataataggcggccacgtgtataatatcgtaacaaattaagtatagtttgtttaatttgttaccattaattttag |
36328449 |
T |
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| Q |
113 |
ggatagtttgttccacgcatatactttaaattgacctaaatcgtgcccaagtttctccattcactattctctcnnnnnnnaagttggtg---------gt |
203 |
Q |
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| T |
36328448 |
ggatagtttgttccacgcatatactttaaattgacaaaaatcgtgcccaagtttctgcattcactattctctctttttttaagttggtggtgttatacgt |
36328349 |
T |
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| Q |
204 |
gagtgacaacaatccttttcaaagtttatcgataatttcactttccataaaaggttataataatacgtgagtgacaacaatggaagaggaaagtgacaga |
303 |
Q |
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| T |
36328348 |
gagcgacaacaatccttttcaaagtttatcgataatttcactttccataaaaggttataataatacgtgagtgacaacaatggaagaggaaagtgacaga |
36328249 |
T |
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| Q |
304 |
at |
305 |
Q |
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|| |
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| T |
36328248 |
at |
36328247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 36314182 - 36314142
Alignment:
| Q |
210 |
caacaatccttttcaaagtttatcgataatttcactttcca |
250 |
Q |
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| T |
36314182 |
caacaatccttttaaaagtttattgataatttcactttcca |
36314142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 36334253 - 36334210
Alignment:
| Q |
207 |
tgacaacaatccttttcaaagtttatcgataatttcactttcca |
250 |
Q |
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| T |
36334253 |
tgacaataatccttttcaaagtttattgatattttcactttcca |
36334210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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