View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18827_low_20 (Length: 277)
Name: NF18827_low_20
Description: NF18827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18827_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 113 - 244
Target Start/End: Original strand, 7428332 - 7428463
Alignment:
| Q |
113 |
caaaaatatattgtcgtttcctggtcacttacctttgttaatgatacctgaaaaattataatattgtaaactaattaaaaagatgtttagacaaaattgt |
212 |
Q |
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| T |
7428332 |
caaaaacatattgtcgtttcctggtcacttacctttgttaatgatacctgaaaaattataatattgtaaactaattaaaaagatgtttagacaaaattgt |
7428431 |
T |
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| Q |
213 |
actataatctatagctatataaatgcaatatc |
244 |
Q |
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| T |
7428432 |
actatactctatagctatagaaatgcaatatc |
7428463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 7427708 - 7427822
Alignment:
| Q |
1 |
taaagaagaccgtacaaattttgagaatccacccgtctgactggattaagaaagtcatccgataaatgaaatgagtcaaccattaagataccaaataatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7427708 |
taaagaagaccgtacaaattttgagaatccacccgtctgaccggattaagaaagtcatccgataaatgaaatgagtcaaccattaagataccaaataatg |
7427807 |
T |
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| Q |
101 |
tcgaagtaattacaa |
115 |
Q |
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||||||||||||||| |
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| T |
7427808 |
tcgaagtaattacaa |
7427822 |
T |
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