View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18827_low_21 (Length: 276)
Name: NF18827_low_21
Description: NF18827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18827_low_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 1866032 - 1865783
Alignment:
| Q |
13 |
gagatgaactactacctgcattgattaattcaaactatactttgtaactaagaatacatttttatatgtaacaattgaaaaatgggtcacattaatccac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1866032 |
gagatgaactactacctgcattgattaattcaaactatactttgtaactaagaatacatttttatatgtaacaattgaaaaatgggtcacattaatccac |
1865933 |
T |
|
| Q |
113 |
ataaacataagagagaatacatacctaaaaacaaagaagcatgagaagactcttctggaaagctaaaatttctagacaatagttcattagaagaagtctt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1865932 |
ataaacataagagagaatacatacctaaaaacaaagaagcatgagaagactcttctggaaagctaaaatttctagacaatagttcattagaagaagtctt |
1865833 |
T |
|
| Q |
213 |
tgtatgatccagaattgctccattcatagaacgtgagttaggttcaacat |
262 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1865832 |
tgtatgatccagaattgctccattcacagaacgtgagttaggttcaacat |
1865783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University