View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18827_low_24 (Length: 246)
Name: NF18827_low_24
Description: NF18827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18827_low_24 |
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| [»] scaffold0896 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 8656409 - 8656180
Alignment:
| Q |
1 |
cttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaattttccagcattaacctac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8656409 |
cttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaaatttccagcattaacctac |
8656310 |
T |
|
| Q |
101 |
ttgtttttagggtcctttgactttggtgtggacgatgatggccgtgttgagcctttttcagcatttaagaggttgaatagtttgattcttcaaaattgtt |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8656309 |
ttatttttagggtcctttgactttggtgtggacgatgatggccgtgttgagcctttttcagcatttaagaggttgaatagtttgattcttcaaaattgtc |
8656210 |
T |
|
| Q |
201 |
gctcttttaacaaacaaaacctatgcatat |
230 |
Q |
| |
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||||| || ||||||||||||| ||||||| |
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| T |
8656209 |
gctctcttgacaaacaaaacctctgcatat |
8656180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 7140494 - 7140265
Alignment:
| Q |
1 |
cttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaattttccagcattaacctac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7140494 |
cttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcgtcaacgaacattatttcaaaattctttgaattttccagcattaacctac |
7140395 |
T |
|
| Q |
101 |
ttgtttttagggtcctttgactttggtgtggacgatgatggccgtgttgagcctttttcagcatttaagaggttgaatagtttgattcttcaaaattgtt |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7140394 |
ttctttttagggtcctttgactttggtgtggacgatgatggccgtgttgagcctttttcagcatttaagaggttgaatagtttgattcttcaaaattgtc |
7140295 |
T |
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| Q |
201 |
gctcttttaacaaacaaaacctatgcatat |
230 |
Q |
| |
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|| | || ||||||||||||| ||||||| |
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| T |
7140294 |
gcacccttgacaaacaaaacctttgcatat |
7140265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 8680105 - 8679904
Alignment:
| Q |
1 |
cttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaattttccagcattaacctac |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8680105 |
cttcttttcatgtgacactttaacatcacttcacatttctgttgcttttcctcaacgaacattatttccaaattctttgaattttccatgattaacctac |
8680006 |
T |
|
| Q |
101 |
ttgtttttagggtcctttgactttggtgtggacgatgatggccgtgttgagcctttttcagcatttaagaggttgaatagtttgattcttcaaaattgtt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
8680005 |
ttgtttttagggtcctttgactttggtgtggacgataatggccgtgttgagcctttttcagcatttaagaggttgaatagcttgattgttcaaaattgtt |
8679906 |
T |
|
| Q |
201 |
gc |
202 |
Q |
| |
|
|| |
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|
| T |
8679905 |
gc |
8679904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 7115269 - 7115093
Alignment:
| Q |
15 |
acactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaattttccagcattaacctacttgtttttagggtc |
114 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |||| |||| |||| |
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| T |
7115269 |
acactttaacatctcttcacgtttctgttgcttctcctcaaagaactttatttccaaattctttgaattttccagcattaactagtttgtctttatggtc |
7115170 |
T |
|
| Q |
115 |
ctttgactttggtgtggacgatgatggccgtgttgagcctttttcagcatttaagaggttgaatagtttgattcttc |
191 |
Q |
| |
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|||||||||| |||||| | |||||| ||||||||| ||||| |||||||||||||| || | |||||| |||| |
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| T |
7115169 |
ctttgactttcgtgtggttggtgatggtaatgttgagcccttttcggcatttaagaggttaaaaaatttgatacttc |
7115093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 7120341 - 7120165
Alignment:
| Q |
15 |
acactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaattttccagcattaacctacttgtttttagggtc |
114 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |||| |||| |||| |
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| T |
7120341 |
acactttaacatctcttcacgtttctgttgcttctcctcaaagaactttatttccaaattctttgaattttccagcattaactagtttgtctttatggtc |
7120242 |
T |
|
| Q |
115 |
ctttgactttggtgtggacgatgatggccgtgttgagcctttttcagcatttaagaggttgaatagtttgattcttc |
191 |
Q |
| |
|
|||||||||| |||||| | |||||| ||||||||| ||||| |||||||||||||| || | |||||| |||| |
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|
| T |
7120241 |
ctttgactttcgtgtgggtggtgatggtaatgttgagcccttttcggcatttaagaggttaaaaaatttgatccttc |
7120165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 7123745 - 7123569
Alignment:
| Q |
15 |
acactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaattttccagcattaacctacttgtttttagggtc |
114 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |||| |||| |||| |
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| T |
7123745 |
acactttaacatctcttcacgtttctgttgcttctcctcaaagaactttatttccaaattctttgaattttccagcattaactagtttgtctttacggtc |
7123646 |
T |
|
| Q |
115 |
ctttgactttggtgtggacgatgatggccgtgttgagcctttttcagcatttaagaggttgaatagtttgattcttc |
191 |
Q |
| |
|
|||||||||| |||||| | |||||| ||||||||| ||||| |||||||||||||| || | |||||| |||| |
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|
| T |
7123645 |
ctttgactttcgtgtggttggtgatggtaatgttgagcccttttcggcatttaagaggttaaaaaatttgatacttc |
7123569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 7175144 - 7174960
Alignment:
| Q |
1 |
cttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaattttccagcattaacctac |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || ||| | || || | ||||| ||||||||||||||||||| ||||||||||||| |||||| || |
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|
| T |
7175144 |
cttcttttcatgtcacactttaacatctcttaacctttctttttctgattctcaagaaacattatttccaaattctctgaattttccagctttaaccaac |
7175045 |
T |
|
| Q |
101 |
ttgtttttagggtcctttgactttggtgtggacgatgatggccgtgttgagcctttttcagcatttaagaggttgaatagtttga |
185 |
Q |
| |
|
|||| |||| | ||| | |||| ||| || ||||||||||||||| |||||||| || |||||| |||||||||||||||| |
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|
| T |
7175044 |
ttgtctttacattacttagcctttcgtgcgggcgatgatggccgtgtcaagccttttacattatttaacaggttgaatagtttga |
7174960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 13492331 - 13492369
Alignment:
| Q |
58 |
aacattatttccaaattctttgaattttccagcattaac |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
13492331 |
aacattatttccaaattctttgaattttccagcattaac |
13492369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 14288539 - 14288487
Alignment:
| Q |
134 |
gatgatggccgtgttgagcctttttcagcatttaagaggttgaatagtttgat |
186 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||| | |||||||| |||||| |
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|
| T |
14288539 |
gatgatggccgtgttgagcctttttcatcatgtaacaagttgaatactttgat |
14288487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0896
Description:
Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 2595 - 2640
Alignment:
| Q |
15 |
acactttaacatctcttcacatttgtgttgcttttcctcaacgaac |
60 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| ||||||| |||| |
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|
| T |
2595 |
acactttaacatctcttcacgtttctgttgcttctcctcaaagaac |
2640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 186
Target Start/End: Original strand, 6889507 - 6889636
Alignment:
| Q |
57 |
gaacattatttccaaattctttgaattttccagcattaacctacttgtttttagggtcctttgactttggtgtggacgatgatggccgtgttgagccttt |
156 |
Q |
| |
|
||||||||||||| | |||| | ||||| ||||||||| || ||||||| ||| ||| || |||| ||| ||||||||||| | | ||||||||| |
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| T |
6889507 |
gaacattatttcctagttctcttaatttgccagcattagccaccttgtttctagagtcattcacctttcctgttgacgatgatggtcatactgagccttt |
6889606 |
T |
|
| Q |
157 |
ttcagcatttaagaggttgaatagtttgat |
186 |
Q |
| |
|
||| ||||||| || |||||||||||||| |
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|
| T |
6889607 |
ttcggcatttagtagtttgaatagtttgat |
6889636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 38862945 - 38862905
Alignment:
| Q |
56 |
cgaacattatttccaaattctttgaattttccagcattaac |
96 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||||||| |
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|
| T |
38862945 |
cgaacattatttccaaaatctttgaatttgcccgcattaac |
38862905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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