View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18827_low_25 (Length: 239)
Name: NF18827_low_25
Description: NF18827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18827_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 11687279 - 11687469
Alignment:
| Q |
25 |
ttattacattagatccttattgattaatcaatcatctatcatcaaagtaa---aagtattgatattatttcaaatgcataagaatttaggttctacaaca |
121 |
Q |
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| T |
11687279 |
ttattacattagatcttctttgactaatcaataatctatcatcaaagtaataaaaatattgatattaattcaaatgcataagaatttaacttcttcaaca |
11687378 |
T |
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| Q |
122 |
taatctaagtaaaatcatgtacaattaatgcaaaatatactcttcacaactcaaccctatacattgaaattcaaactctaagtgtgaccct |
212 |
Q |
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| T |
11687379 |
taatctaagtaaaaacatgtagaattaatgcaaaatatactcttcacaactcaaccctgcacattgaagttcaaactccaagtgtgaccct |
11687469 |
T |
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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 11691128 - 11691202
Alignment:
| Q |
101 |
aagaatttaggttctacaacataatctaagtaaaatcatgtacaattaatgcaaaatatactcttcacaactcaa |
175 |
Q |
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| T |
11691128 |
aagaatttaacttctgcaacataatctaagtaaaaacatttagaattaatgcaaaatatactcttcacaagtcaa |
11691202 |
T |
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