View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18827_low_4 (Length: 548)

Name: NF18827_low_4
Description: NF18827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18827_low_4
NF18827_low_4
[»] scaffold0853 (1 HSPs)
scaffold0853 (16-532)||(1335-1850)
[»] chr5 (5 HSPs)
chr5 (156-532)||(23205155-23205530)
chr5 (16-159)||(42521153-42521296)
chr5 (16-118)||(21146407-21146509)
chr5 (67-159)||(21146513-21146605)
chr5 (29-89)||(31219530-31219590)
[»] chr7 (4 HSPs)
chr7 (16-159)||(38060430-38060573)
chr7 (16-159)||(31179300-31179443)
chr7 (19-85)||(8487261-8487328)
chr7 (19-85)||(8512935-8513002)
[»] chr4 (4 HSPs)
chr4 (16-159)||(46618885-46619028)
chr4 (19-85)||(45920045-45920111)
chr4 (29-77)||(41695938-41695987)
chr4 (470-510)||(40384231-40384271)
[»] chr3 (5 HSPs)
chr3 (16-159)||(47168417-47168560)
chr3 (19-85)||(20200404-20200470)
chr3 (19-85)||(20202588-20202654)
chr3 (19-79)||(53949877-53949938)
chr3 (426-527)||(7776470-7776571)
[»] chr2 (3 HSPs)
chr2 (8-159)||(13328187-13328338)
chr2 (19-84)||(39629273-39629338)
chr2 (19-85)||(42849253-42849319)
[»] chr1 (4 HSPs)
chr1 (16-159)||(7012496-7012639)
chr1 (16-159)||(39848339-39848482)
chr1 (19-85)||(47374273-47374339)
chr1 (19-85)||(5496774-5496840)
[»] chr8 (3 HSPs)
chr8 (16-155)||(29267241-29267380)
chr8 (16-118)||(5331365-5331467)
chr8 (67-159)||(5331471-5331563)
[»] scaffold0009 (1 HSPs)
scaffold0009 (19-85)||(106049-106116)


Alignment Details
Target: scaffold0853 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 532
Target Start/End: Complemental strand, 1850 - 1335
Alignment:
Q  16 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  1850 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaatttataccgcgatgatcgaaatccgtaacacaacatct 1751  T
Q  116 gtagaaaccgaaatcacaaaatcctacatgccacggtaaccaagccctcttgatcaaactgttcaactagattctttgcagccccacccannnnnnnatg 215  Q
    ||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||       |||    
T  1750 gtacaaaccgaaatcacaaaatcctacatgccacactaaccaagccctcttgatcaaactgttcaactagattctttgctgccccacccatttttttatg 1651  T
Q  216 gcacctaagatagtttatactcttagggctaaccattgcatgattatgagtattgttaaatgtaatgatagtccatttgggcctcatttttgcttttgaa 315  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1650 gcacctaagatagtttatactcttggggctaaccattgcatgattatgagtattgttaaatgtaatgatagtccatttgggcctcatttttgcttttgaa 1551  T
Q  316 actaccagtgttgccttacaatcagctcttgatgttgaacatcnnnnnnnnnnnnnnnactgtgattgtattgctttcttctttgtcattattatcaaca 415  Q
    ||||||||||||||||||||||||| ||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||    
T  1550 actaccagtgttgccttacaatcagttcttgatgttgaacat-ttttttttgctttttactgtgattgtattgctttcttctttgtcattattatcaaca 1452  T
Q  416 tgttggccagcattagagcaaacaaatatgcacaaatttgtcttagttgaacgtgtacgaattctaaaaccttcttttttagcaaatgatgtgtataaat 515  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  1451 tgtttgccaacattagagcaaacaaatatgcacaaatttgtcttagttgaaagtgtacgaattccaaaaccttcttttttagcaaatgatgtgtataaat 1352  T
Q  516 ttttaacatcatcaaga 532  Q
    |||||||||||||||||    
T  1351 ttttaacatcatcaaga 1335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 156 - 532
Target Start/End: Original strand, 23205155 - 23205530
Alignment:
Q  156 caagccctcttgatcaaactgttcaactagattctttgcagccccacccannnnnnnatggcacctaagatagtttatactcttagggctaaccattgca 255  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||       ||||||||||||||||||||||||||| |||||||| ||||||    
T  23205155 caagccctcttgatcaaactgttcaactagattctttgctgtcccacccatttttttatggcacctaagatagtttatactcttggggctaactattgca 23205254  T
Q  256 tgattatgagtattgttaaatgtaatgatagtccatttgggcctcatttttgcttttgaaactaccagtgttgccttacaatcagctcttgatgttgaac 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  23205255 tgattatgagtattgttaaatgtaatgatagtccatttgggcctcatttttgcttttgagactaccagtgttgccttataatcagttcttgatgttgaac 23205354  T
Q  356 atcnnnnnnnnnnnnnnnactgtgattgtattgctttcttctttgtcattattatcaacatgttggccagcattagagcaaacaaatatgcacaaatttg 455  Q
    |||               ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  23205355 atc-tttttttgctttttactgtgattgtattgctttcttctttgtcattactatcaacatgttggccagcattagagcaaacaaatatgcataaatttg 23205453  T
Q  456 tcttagttgaacgtgtacgaattctaaaaccttcttttttagcaaatgatgtgtataaatttttaacatcatcaaga 532  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23205454 tcttagttgaacgtgtacgaattccaaaaccttcttttttagcaaatgatgtgtataaatttttaacatcatcaaga 23205530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 42521153 - 42521296
Alignment:
Q  16 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||    
T  42521153 attaacgaagtgaataatgactaattctctaatttaagttctttatgcaatgctatgagtaattcataccgcgatgatcgaaatccgtaacgcaacatct 42521252  T
Q  116 gtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 159  Q
    |||  ||||||||||||||||||||||| ||||| |||||||||    
T  42521253 gtaccaaccgaaatcacaaaatcctacaagccaccgtaaccaag 42521296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 21146407 - 21146509
Alignment:
Q  16 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 115  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||| ||    
T  21146407 attaacaaagtgaataatgaataattatctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccataatgcaacatct 21146506  T
Q  116 gta 118  Q
    |||    
T  21146507 gta 21146509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 21146513 - 21146605
Alignment:
Q  67 gttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaactgtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 159  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| |||||  |||| |||||| ||||||||||| ||||| |||||||||    
T  21146513 gttatgagtaattcataccgcgatgattgaaatccgtaacgcaacatctgtaccaaccaaaatcagaaaatcctacaggccaccgtaaccaag 21146605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 31219590 - 31219530
Alignment:
Q  29 ataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcga 89  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||    
T  31219590 ataatgactaattctctaatttaagttctttgtgcaatgttgtgagtaatttataccgcga 31219530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 9e-59; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 38060573 - 38060430
Alignment:
Q  16 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||    
T  38060573 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgggacgatcgaaatccgtaacacaacatct 38060474  T
Q  116 gtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 159  Q
    |||  ||||||||||||||||||||||| ||||| |||||||||    
T  38060473 gtatcaaccgaaatcacaaaatcctacaggccaccgtaaccaag 38060430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 31179443 - 31179300
Alignment:
Q  16 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 115  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||    
T  31179443 attaacaaagtgaataatgactaattccctaatttaagttctttatgcaatgttatgagtaattcataccacgatgatcgaaatccataacgcaacatct 31179344  T
Q  116 gtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 159  Q
    |||  ||||||||||||||||||||||| ||||| |||||||||    
T  31179343 gtaccaaccgaaatcacaaaatcctacaggccaccgtaaccaag 31179300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 8487328 - 8487261
Alignment:
Q  19 aacaaagtgaataatgactaattctctaatttaagttctttatgc-aatgttatgagtaattcatacc 85  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  8487328 aacaaaatgaataatgactaattctctaatttaagttctttatgcaaatgttgtgagtaattcatacc 8487261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 8513002 - 8512935
Alignment:
Q  19 aacaaagtgaataatgactaattctctaatttaagttctttatgc-aatgttatgagtaattcatacc 85  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  8513002 aacaaaatgaataatgactaattctctaatttaagttctttatgcaaatgttgtgagtaattcatacc 8512935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 9e-59; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 46618885 - 46619028
Alignment:
Q  16 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||    
T  46618885 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgacgatcgaaatccgtaacgcaacatct 46618984  T
Q  116 gtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 159  Q
    |||  |||| |||||||||||||||||||||||| |||||||||    
T  46618985 gtaccaaccaaaatcacaaaatcctacatgccaccgtaaccaag 46619028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 45920045 - 45920111
Alignment:
Q  19 aacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcatacc 85  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  45920045 aacaaaatgaataatgactaattctctaatgtaagttctttatgcaatgttgtgagtaattcatacc 45920111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 41695938 - 41695987
Alignment:
Q  29 ataatgactaattctctaatttaagttctttatgc-aatgttatgagtaa 77  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  41695938 ataatgactaattctctaatttaagttctttatgcaaatgttgtgagtaa 41695987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 40384231 - 40384271
Alignment:
Q  470 gtacgaattctaaaaccttcttttttagcaaatgatgtgta 510  Q
    |||||||||| |||||||||||| ||||||||||| |||||    
T  40384231 gtacgaattccaaaaccttctttcttagcaaatgacgtgta 40384271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 9e-59; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 47168417 - 47168560
Alignment:
Q  16 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||    
T  47168417 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgacgatcgaaatccgtaacgcaacatct 47168516  T
Q  116 gtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 159  Q
    |||  ||||||||||||||||||||||| ||||| |||||||||    
T  47168517 gtatcaaccgaaatcacaaaatcctacaggccaccgtaaccaag 47168560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 20200404 - 20200470
Alignment:
Q  19 aacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcatacc 85  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  20200404 aacaaaatgaataatgactaattctctaatgtaagttctttatgcaatgttgtgagtaattcatacc 20200470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 20202588 - 20202654
Alignment:
Q  19 aacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcatacc 85  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  20202588 aacaaaatgaataatgactaattctctaatgtaagttctttatgcaatgttgtgagtaattcatacc 20202654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 53949877 - 53949938
Alignment:
Q  19 aacaaagtgaataatgactaattctctaatttaagttctttatgc-aatgttatgagtaatt 79  Q
    |||||| |||||||||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  53949877 aacaaaatgaataatgactaattctctaatttaagttctttttgcaaatgttgtgagtaatt 53949938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 527
Target Start/End: Original strand, 7776470 - 7776571
Alignment:
Q  426 cattagagcaaacaaatatgcacaaatttgtcttagttgaacgtgtacgaattctaaaaccttcttttttagcaaatgatgtgtataaatttttaacatc 525  Q
    ||||||| || |||| | |||| ||||||  ||| |||| ||| || ||||||| |||||||||||| |||||||||||| |||| || |  ||||||||    
T  7776470 cattagaacatacaagtgtgcaaaaattttccttggttgtacgagttcgaattccaaaaccttctttcttagcaaatgatatgtagaattccttaacatc 7776569  T
Q  526 at 527  Q
    ||    
T  7776570 at 7776571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 9e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 13328338 - 13328187
Alignment:
Q  8 ccaagaatattaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaaca 107  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  13328338 ccaaaaatattaacaaagtgaataatgactagttctctaatttaagttctttatgcaatgatatgagtaattcataccgcgatgatcgaaatccgtaacg 13328239  T
Q  108 caacaactgtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 159  Q
    ||||| |||||  ||||||||||||||||||||||| ||||| |||||||||    
T  13328238 caacatctgtaccaaccgaaatcacaaaatcctacaggccaccgtaaccaag 13328187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 39629273 - 39629338
Alignment:
Q  19 aacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcatac 84  Q
    |||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||    
T  39629273 aacaaaatgaataatgactaattctctaatgtaagttctttatgtaatgttgtgagtaattcatac 39629338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 42849253 - 42849319
Alignment:
Q  19 aacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcatacc 85  Q
    |||||| |||||||||| ||||| |||||| |||||||||||||||||||| |||||||||||||||    
T  42849253 aacaaaatgaataatgattaattttctaatgtaagttctttatgcaatgttgtgagtaattcatacc 42849319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 6e-54; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 7012496 - 7012639
Alignment:
Q  16 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||    
T  7012496 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgatatgagtaattcataccgcgatgatcgaaatccgtaacgcaacatct 7012595  T
Q  116 gtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 159  Q
    |||  ||| |||||||||||||||||||  |||| |||||||||    
T  7012596 gtaccaactgaaatcacaaaatcctacagtccaccgtaaccaag 7012639  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 39848339 - 39848482
Alignment:
Q  16 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||| ||    
T  39848339 attaactaagtgaataatgactaattctctaatttaagttctttatgcaatgctatgagtaattcataccacgatgatcgaaatccataacgcaacatct 39848438  T
Q  116 gtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 159  Q
    |||  ||||||||||||||||||||||| ||||| |||||||||    
T  39848439 gtaccaaccgaaatcacaaaatcctacaagccaccgtaaccaag 39848482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 47374339 - 47374273
Alignment:
Q  19 aacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcatacc 85  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  47374339 aacaaaatgaataatgactaattctctaatgtaagttctttatgcaatgttgtgagtaattcatacc 47374273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 5496840 - 5496774
Alignment:
Q  19 aacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcatacc 85  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  5496840 aacaaaatgaataatgactaattctttaatgtaagttctttatgcaatgttgtgagtaattcatacc 5496774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 29267380 - 29267241
Alignment:
Q  16 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||  |    
T  29267380 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgacgatcgaaatccgtaacgcaacattt 29267281  T
Q  116 gtagaaaccgaaatcacaaaatcctacatgccacggtaac 155  Q
    |||  ||||||||||||||||||||| | ||||| |||||    
T  29267280 gtaccaaccgaaatcacaaaatcctataggccaccgtaac 29267241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 5331365 - 5331467
Alignment:
Q  16 attaacaaagtgaataatgactaattctctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaact 115  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||| ||    
T  5331365 attaacaaagtgaataatgattaattatctaatttaagttctttatgcaatgttatgagtaattcataccgcgatgatcgaaatccttaatgcaacatct 5331464  T
Q  116 gta 118  Q
    |||    
T  5331465 gta 5331467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 5331471 - 5331563
Alignment:
Q  67 gttatgagtaattcataccgcgatgatcgaaatccgtaacacaacaactgtagaaaccgaaatcacaaaatcctacatgccacggtaaccaag 159  Q
    ||||||||||||||||||||||||||| ||||||| |||| ||||| |||||  |||| |||||| ||||||||||| | ||| |||||||||    
T  5331471 gttatgagtaattcataccgcgatgattgaaatccttaacgcaacatctgtaccaaccaaaatcagaaaatcctacaggtcaccgtaaccaag 5331563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 106049 - 106116
Alignment:
Q  19 aacaaagtgaataatgactaattctctaatttaagttctttatgc-aatgttatgagtaattcatacc 85  Q
    |||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||    
T  106049 aacaaaatgaataatgactaattctctaatttaagttctttattcaaatgttgtgagtaattcatacc 106116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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