View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18827_low_5 (Length: 521)
Name: NF18827_low_5
Description: NF18827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18827_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 7e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 337 - 519
Target Start/End: Original strand, 9452418 - 9452601
Alignment:
| Q |
337 |
agaacaattaccttggttgtttctgttctg-tctatctcttaagcattttgttattggacaagtctttgtttttagacattgctattatttaatattctg |
435 |
Q |
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| T |
9452418 |
agaacaattaccttggttgtttctgttctggtttatctcttaagaattttgttattggacaagtctttgtttttagacattgctattatttaatattctg |
9452517 |
T |
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| Q |
436 |
aatgaaatgaactttatcatttacatgctttcgtaaaattcactactctggcttaattacttacatctatatattcttcgacat |
519 |
Q |
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| T |
9452518 |
aatgcaatgaactctatcatttacatgttttcgtaaaattcactactctggcttaattacttacatctatatatttttagacat |
9452601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 9452075 - 9452213
Alignment:
| Q |
17 |
agttgtcatgccttttccagatatcattgccttaaaggttagtacatgattgaaatgtgaaaaggaaataaaaaaggattttgatagagcaatgttctga |
116 |
Q |
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| T |
9452075 |
agttgccatgccttttccagatatcattgccttaaaggttagtacatgattgaaatgtgaaaaggaaataaaaaaagattttgatagagcaatgttctga |
9452174 |
T |
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| Q |
117 |
acattttttcttgaattactaattattattactgtgtct |
155 |
Q |
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| T |
9452175 |
acattttttcttgaattactaattattattactgtgtct |
9452213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 155 - 287
Target Start/End: Original strand, 9452236 - 9452368
Alignment:
| Q |
155 |
tcataaatgcagacaaggatgatgaatatcccgccgattttaaggtctgttgcacatcattccaagatgttgcacgtcaaaattgaacctaaggaataga |
254 |
Q |
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| T |
9452236 |
tcataaatgcagacaaggatgatgaatatcccgccgattttaaggtttgttgcgcatcattcaaagatggtgaacgtcaaaattgaacctaaggaataga |
9452335 |
T |
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| Q |
255 |
gttgaacgtgctgttgttgacgaagagcatcta |
287 |
Q |
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| T |
9452336 |
gttgaacatgttgttgttgacgaagagcatcta |
9452368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 339 - 510
Target Start/End: Complemental strand, 21547057 - 21546886
Alignment:
| Q |
339 |
aacaattaccttggttgtttctgttctgtctatctcttaagcattttgttattggacaagtctttgtttttagacattgctattatttaatattctgaat |
438 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21547057 |
aacaattaccatggttgtttctgttctgttcatctcttaagcattttgttattggacaagtctttgtttgtagacattgctattatttaatattctgaat |
21546958 |
T |
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| Q |
439 |
gaaatgaactttatcatttacatgctttcgtaaaattcactactctggcttaattacttacatctatatatt |
510 |
Q |
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| T |
21546957 |
gcaatgaactctatcatttacatgttttcgtaaaattcactactctagcttaattacttacatctatatatt |
21546886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 21547403 - 21547270
Alignment:
| Q |
18 |
gttgtcatgccttttccagatatcattgccttaaaggttagtacatgattgaaatgtgaaaaggaaataaaaaaggattttgatagagcaatgttctgaa |
117 |
Q |
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|||| |||||||||||||||||||||| ||||||||| | |||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| |
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| T |
21547403 |
gttgccatgccttttccagatatcattcccttaaagggttgtacatgattgaaatgtg-aaagtaaataaaaaaggaatttgatagagcaatgttctgaa |
21547305 |
T |
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| Q |
118 |
ca-ttttttcttgaattactaattattattactgt |
151 |
Q |
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| T |
21547304 |
catttttttcttgaattactaattattattactgt |
21547270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 155 - 287
Target Start/End: Complemental strand, 21547241 - 21547109
Alignment:
| Q |
155 |
tcataaatgcagacaaggatgatgaatatcccgccgattttaaggtctgttgcacatcattccaagatgttgcacgtcaaaattgaacctaaggaataga |
254 |
Q |
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||||||| ||| ||||||||||||||||||| ||||||||||||||||||| |||| | ||| |||||| ||||||||||||||||||||||||| |||| |
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| T |
21547241 |
tcataaaggcaaacaaggatgatgaatatcctgccgattttaaggtctgttacacaaccttcaaagatggtgcacgtcaaaattgaacctaaggattaga |
21547142 |
T |
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| Q |
255 |
gttgaacgtgctgttgttgacgaagagcatcta |
287 |
Q |
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| T |
21547141 |
gttgcatgtgctgttgttgacgaggagcatcta |
21547109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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