View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18827_low_9 (Length: 432)
Name: NF18827_low_9
Description: NF18827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18827_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 37 - 414
Target Start/End: Complemental strand, 11819472 - 11819095
Alignment:
| Q |
37 |
tttgttttgtcactttataaatactttagaataaacttttgagagtgtcacaactagaagtgattttttggaggcgttccttcatggtgttatagcccaa |
136 |
Q |
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| T |
11819472 |
tttgttttgtcactttatagatactttagaataaacttttgggagtgtcacaactagaagtgattttttggaggtgtttcttcatgatgttatagcccaa |
11819373 |
T |
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| Q |
137 |
agtttttcctaaaagtttcaccacaagaacattttttcagggggtacataattcctgaaatacaatcaactccaaatggactttagaaagaagacgatta |
236 |
Q |
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| T |
11819372 |
agttttccctaaaagtttcaccacaagaacatctttttaaggggtacataattcttgaaatacaatcaactttaaatggactttagaaagaagacgatta |
11819273 |
T |
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| Q |
237 |
ccatcttcaagctcaatgcagacaaatttattctctaacaaatcttatttttccctaggagggatctcttgggtagatcccaaaagtttttctcaaaagg |
336 |
Q |
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| T |
11819272 |
ccatcttcaagctcaatgcaaacaagtttcttctctaacaaatcttctttttccctaggagggatctcttgggtagatcccaaaagttttcctcagaagg |
11819173 |
T |
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| Q |
337 |
acgatttgggtagaggctttgtgaaggtcggggggttttggtctgttggagtgggggattgccatgagtggaaaagac |
414 |
Q |
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| T |
11819172 |
acggtttaggtagaggctttgtgaaggtcggggggttttggtctgttggagtgggggattgccatgagcggaaaagac |
11819095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 11816146 - 11816086
Alignment:
| Q |
36 |
gtttgttttgtcactttataaatactttagaataaacttttgagagtgtcacaactagaag |
96 |
Q |
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| T |
11816146 |
gtttgttttctcactttatagatgctttagaagaaaattttgagagtgtcacaactagaag |
11816086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 11809899 - 11809832
Alignment:
| Q |
36 |
gtttgttttgtcactttataaatactttagaataaacttttgagagtgtcacaactagaagtgatttt |
103 |
Q |
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| T |
11809899 |
gtttgttttgtcacttgatagatactttagaagaatattttgggagtgtcacaactagaagagatttt |
11809832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 11813144 - 11813077
Alignment:
| Q |
36 |
gtttgttttgtcactttataaatactttagaataaacttttgagagtgtcacaactagaagtgatttt |
103 |
Q |
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| T |
11813144 |
gtttgttttgtcactttatagatattttagaagaaaattttggaagtgtcacaactagaagagatttt |
11813077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 101 - 365
Target Start/End: Complemental strand, 29910477 - 29910211
Alignment:
| Q |
101 |
tttttggaggcgttccttcatggtgttatagcccaaagtttttcctaaaagtttcaccacaagaacattttttcagggggtacataattcctgaaataca |
200 |
Q |
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| T |
29910477 |
tttttggaggcgttccttcatggtgttttagtccaatggtttccataaaagtttcaacacaagcatatctttccaaggggtacatagttcctgaaataca |
29910378 |
T |
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| Q |
201 |
atcaactccaaatggactttagaaagaagacgattaccatcttcaagctcaatgcagacaaatttattctctaacaaatcttatttttccctaggaggga |
300 |
Q |
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| T |
29910377 |
ttcgactccaaatagattttgggaagaagacgattaccagcttcaagctcaatgcagacaagtttcttctctaccaactcttctttttctctaggatgga |
29910278 |
T |
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| Q |
301 |
tctcttgggtagatcccaaaagtttttctcaaaaggacgattt--gggtagaggctttgtgaaggtc |
365 |
Q |
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| T |
29910277 |
tctcttgggtagaacccaaaagtttttctcaaaaggacggtttaggggtagaggctttgtgaaggtc |
29910211 |
T |
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