View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18828_high_3 (Length: 264)

Name: NF18828_high_3
Description: NF18828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18828_high_3
NF18828_high_3
[»] chr8 (15 HSPs)
chr8 (9-260)||(38444340-38444604)
chr8 (94-198)||(7870338-7870442)
chr8 (94-194)||(42503029-42503129)
chr8 (94-197)||(42503887-42503990)
chr8 (97-197)||(42578709-42578809)
chr8 (94-197)||(38443695-38443798)
chr8 (51-197)||(6461880-6462026)
chr8 (94-180)||(11520056-11520142)
chr8 (94-197)||(11519350-11519454)
chr8 (94-197)||(12203308-12203411)
chr8 (94-197)||(12447736-12447839)
chr8 (123-197)||(6462610-6462684)
chr8 (135-197)||(17923866-17923928)
chr8 (96-151)||(17923950-17924005)
chr8 (135-192)||(8814483-8814540)
[»] chr2 (10 HSPs)
chr2 (94-197)||(35029826-35029930)
chr2 (123-197)||(34228147-34228221)
chr2 (97-197)||(34229043-34229143)
chr2 (97-197)||(39063805-39063905)
chr2 (94-197)||(39062865-39062968)
chr2 (57-191)||(39062225-39062359)
chr2 (68-143)||(10148553-10148628)
chr2 (98-184)||(1233713-1233799)
chr2 (93-198)||(6205388-6205493)
chr2 (123-197)||(38823220-38823294)
[»] chr1 (6 HSPs)
chr1 (97-197)||(7338767-7338867)
chr1 (103-194)||(7338012-7338104)
chr1 (51-197)||(1764516-1764661)
chr1 (99-197)||(2367513-2367611)
chr1 (130-194)||(30142951-30143015)
chr1 (130-194)||(30157590-30157654)
[»] chr5 (7 HSPs)
chr5 (98-198)||(120072-120172)
chr5 (122-192)||(2639717-2639787)
chr5 (123-192)||(40720332-40720401)
chr5 (94-145)||(43379450-43379501)
chr5 (135-185)||(126265-126314)
chr5 (130-164)||(42773971-42774005)
chr5 (94-146)||(1217843-1217895)
[»] chr4 (15 HSPs)
chr4 (97-196)||(24484784-24484883)
chr4 (97-197)||(39310396-39310496)
chr4 (67-198)||(39311310-39311441)
chr4 (98-197)||(44516785-44516885)
chr4 (123-192)||(21857532-21857601)
chr4 (123-192)||(21913395-21913464)
chr4 (68-197)||(32159461-32159590)
chr4 (123-192)||(3464916-3464985)
chr4 (123-184)||(14087669-14087730)
chr4 (97-197)||(31414816-31414916)
chr4 (123-197)||(36385812-36385886)
chr4 (123-197)||(36386029-36386103)
chr4 (212-257)||(53371470-53371515)
chr4 (125-197)||(5469960-5470032)
chr4 (212-256)||(23011436-23011480)
[»] chr3 (7 HSPs)
chr3 (99-196)||(35903690-35903789)
chr3 (97-197)||(37886654-37886754)
chr3 (97-196)||(29642400-29642499)
chr3 (96-152)||(44456691-44456747)
chr3 (151-197)||(29643299-29643345)
chr3 (108-192)||(40810265-40810349)
chr3 (153-197)||(44312393-44312437)
[»] chr6 (6 HSPs)
chr6 (99-197)||(34260116-34260214)
chr6 (129-198)||(34262186-34262255)
chr6 (99-197)||(6829959-6830057)
chr6 (123-198)||(18066283-18066357)
chr6 (99-197)||(6826558-6826656)
chr6 (67-184)||(3163502-3163618)
[»] chr7 (9 HSPs)
chr7 (56-185)||(35752338-35752466)
chr7 (99-197)||(5956439-5956537)
chr7 (97-197)||(35753033-35753137)
chr7 (99-198)||(43844793-43844892)
chr7 (129-197)||(5960993-5961061)
chr7 (94-169)||(39020961-39021037)
chr7 (130-185)||(10270872-10270927)
chr7 (99-190)||(43845858-43845949)
chr7 (99-192)||(4126698-4126791)
[»] scaffold0330 (2 HSPs)
scaffold0330 (97-193)||(13210-13306)
scaffold0330 (97-197)||(12517-12617)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 38444340 - 38444604
Alignment:
Q  9 gagatgaatgggcagcgatgaatgatgagaataa-----aggattgtatgcgcgtgggatatctttttcattaaacaaatgtttgttgttaaccttttaa 103  Q
    |||| |||||||||||||||||||||||||||||     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38444340 gagaagaatgggcagcgatgaatgatgagaataagaagaaggattgtatgcgtgtgggatatctttttcattaaacaaatgtttgttgttaaccttttaa 38444439  T
Q  104 tcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggag--------ctaagatggac 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  38444440 tcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagagcctaagatggac 38444539  T
Q  196 tctgaagtgctaccccttttaatctcaaccattgaattctgtttcgccacgtgtcacgcatcagg 260  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38444540 tctgaagtgccaccccttctaatctcaaccattgaattctgtttcgccacgtgtcacgcatcagg 38444604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 94 - 198
Target Start/End: Original strand, 7870338 - 7870442
Alignment:
Q  94 aaccttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatgg 193  Q
    |||||||||||||||||| ||||||| | |||||||| |||||||||||||||||||| |||| |||||||||||| || |||||||||||| |||||||    
T  7870338 aaccttttaatcacaaccattgattttattttttccatatgtcacacatctataacttcaaatggggtaaattgagaaagtctaaatggagcaaagatgg 7870437  T
Q  194 actct 198  Q
    |||||    
T  7870438 actct 7870442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 42503129 - 42503029
Alignment:
Q  94 aaccttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatgg 193  Q
    ||||||||||||||| || ||||||| | |||||| ||||||||||||||||| |  |||||| ||||||||||||||||  |||||||||| |||||||    
T  42503129 aaccttttaatcacagccattgattttattttttctacatgtcacacatctatgatatgaaatggggtaaattgaggaaacttaaatggagcaaagatgg 42503030  T
Q  194 a 194  Q
    |    
T  42503029 a 42503029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 42503887 - 42503990
Alignment:
Q  94 aaccttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatgg 193  Q
    ||||||||||||||| || || |||| | |||||||||||||||||||||||| |  || ||| |||||||||||||||  ||||||||||| |||||||    
T  42503887 aaccttttaatcacagccattaattttattttttccacatgtcacacatctatgatatggaatggggtaaattgaggaagcctaaatggagcaaagatgg 42503986  T
Q  194 actc 197  Q
    ||||    
T  42503987 actc 42503990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 42578809 - 42578709
Alignment:
Q  97 cttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggact 196  Q
    ||||||||| || || ||||||| | |||| |||||||||| |||||||| ||||||||| |||||||||||| |||  |||||||||| ||||||||||    
T  42578809 cttttaatctcagccattgattttatttttgccacatgtcatacatctatgacttgaaatggggtaaattgagcaaacataaatggagcaaagatggact 42578710  T
Q  197 c 197  Q
    |    
T  42578709 c 42578709  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 197
Target Start/End: Complemental strand, 38443798 - 38443695
Alignment:
Q  94 aaccttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatgg 193  Q
    |||||||||||||||  | ||||||| | |||||| ||||||||| || |||| ||||||||| |||||||||| |||||  |||||||||| |||||||    
T  38443798 aaccttttaatcacagtcattgattttattttttctacatgtcacgcaactatgacttgaaatggggtaaattgtggaaacttaaatggagcaaagatgg 38443699  T
Q  194 actc 197  Q
    ||||    
T  38443698 actc 38443695  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 197
Target Start/End: Complemental strand, 6462026 - 6461880
Alignment:
Q  51 atgcgcgtgggatatctttttcattaaacaaatgtttgttgttaaccttttaatcacaacccttgatttaactttttccacatgtcacacatctataact 150  Q
    ||||||||||||| | || ||||| |||||||||| | ||   ||| | |||||||||||| ||||||| | |||| |||||||||| ||||||||||||    
T  6462026 atgcgcgtgggatttgttgttcatcaaacaaatgtattttccaaacttattaatcacaaccattgattttatttttgccacatgtcatacatctataact 6461927  T
Q  151 tgaaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
    ||||||    ||||||||| ||| | ||||||||| |||||| ||||    
T  6461926 tgaaatgaaataaattgagcaaaccgaaatggagcaaagatgaactc 6461880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 11520056 - 11520142
Alignment:
Q  94 aaccttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaat 180  Q
    |||||||||||||||||| ||||||| | ||||| |||||||||||||||||| |||| |||| | |||||||||| ||| ||||||    
T  11520056 aaccttttaatcacaaccattgattttatttttttcacatgtcacacatctatgactttaaatggtgtaaattgagaaaacctaaat 11520142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 197
Target Start/End: Complemental strand, 11519454 - 11519350
Alignment:
Q  94 aaccttttaatcacaacccttgatttaacttttt-ccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatg 192  Q
    ||||||||||||||| |  ||||||| | ||||| ||||||||||||||||||| | ||||||| ||||||||||| |||| |||||| |||| ||||||    
T  11519454 aaccttttaatcacagctattgattttatttttttccacatgtcacacatctatgatttgaaatggggtaaattgaagaaacctaaattgagcaaagatg 11519355  T
Q  193 gactc 197  Q
     ||||    
T  11519354 aactc 11519350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 12203308 - 12203411
Alignment:
Q  94 aaccttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatgg 193  Q
    |||||||||||||||| | ||||||  | ||||| |||||  ||||||||||| ||||||||| |  |||||||||||||   ||||||||| |||||||    
T  12203308 aaccttttaatcacaatcattgattgtatttttttcacataccacacatctatgacttgaaatggtataaattgaggaaaatgaaatggagcaaagatgg 12203407  T
Q  194 actc 197  Q
    ||||    
T  12203408 actc 12203411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 12447736 - 12447839
Alignment:
Q  94 aaccttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatgg 193  Q
    |||||||||||||||| | ||||||  | ||||| |||||  ||||||||||| ||||||||| |  |||||||||||||   ||||||||| |||||||    
T  12447736 aaccttttaatcacaatcattgattgtatttttttcacataccacacatctatgacttgaaatggtataaattgaggaaaatgaaatggagcaaagatgg 12447835  T
Q  194 actc 197  Q
    ||||    
T  12447836 actc 12447839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 6462610 - 6462684
Alignment:
Q  123 tttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
    |||| |||||||||| |||||||  ||||||||| |||||||||||| |||  |||||||||| |||||||||||    
T  6462610 ttttgccacatgtcatacatctaggacttgaaatggggtaaattgagcaaacataaatggagcaaagatggactc 6462684  T

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Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 17923928 - 17923866
Alignment:
Q  135 tcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
    |||||||||||| ||||||||||||||||||||| ||||| |||||||| | || ||||||||    
T  17923928 tcacacatctatgacttgaaattgggtaaattgaagaaatttaaatggatcaaaaatggactc 17923866  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 17924005 - 17923950
Alignment:
Q  96 ccttttaatcacaacccttgatttaactttttccacatgtcacacatctataactt 151  Q
    |||||||||||||| | |||||||   |||||||||||||||||||||||| ||||    
T  17924005 ccttttaatcacaatcattgattttcttttttccacatgtcacacatctatgactt 17923950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 8814483 - 8814540
Alignment:
Q  135 tcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatg 192  Q
    ||||||||| || ||||| ||| |||||||||||||||| | ||||||||| ||||||    
T  8814483 tcacacatccatgacttgtaatggggtaaattgaggaaaccaaaatggagcaaagatg 8814540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 35029826 - 35029930
Alignment:
Q  94 aaccttttaatcacaacccttgatttaactttt-tccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatg 192  Q
    |||||||||||||||||| |||||||   |||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| |||||     
T  35029826 aaccttttaatcacaaccattgattttgtttttttccacatgtcacacatctatgacttgaaatggggtaaattgaggaaacctaaatggagcaaagata 35029925  T
Q  193 gactc 197  Q
    |||||    
T  35029926 gactc 35029930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 34228221 - 34228147
Alignment:
Q  123 tttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||| |||||||||||    
T  34228221 tttttccacatgtcacacatctataacttgaaatggggtaaattgaggaatcttaaatggagcaaagatggactc 34228147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 34229043 - 34229143
Alignment:
Q  97 cttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggact 196  Q
    ||||||||| || || ||| ||| | |||||||||||||||||||||||| |||| |||| |||||||||||||||   |||||||||| ||||||||||    
T  34229043 cttttaatctcagccattggttttattttttccacatgtcacacatctatgacttaaaatggggtaaattgaggaatcttaaatggagcaaagatggact 34229142  T
Q  197 c 197  Q
    |    
T  34229143 c 34229143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 39063905 - 39063805
Alignment:
Q  97 cttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggact 196  Q
    ||||||||| ||||| ||| ||| || ||| |||||||||| ||||| ||||  ||||| ||  ||||||||||||| ||||||||||| ||||||||||    
T  39063905 cttttaatcccaaccattgtttttacatttgccacatgtcatacatcaataaagtgaaaatgaataaattgaggaaacctaaatggagcaaagatggact 39063806  T
Q  197 c 197  Q
    |    
T  39063805 c 39063805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 39062865 - 39062968
Alignment:
Q  94 aaccttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatgg 193  Q
    ||||||||||||  | || ||||||| | | || |||||||||| |||||||| |||||||||||||||||||||  |||  |||||||| | |||||||    
T  39062865 aaccttttaatcctagccattgattttattgttgccacatgtcatacatctatgacttgaaattgggtaaattgaacaaacataaatggaacaaagatgg 39062964  T
Q  194 actc 197  Q
    ||||    
T  39062965 actc 39062968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 191
Target Start/End: Complemental strand, 39062359 - 39062225
Alignment:
Q  57 gtgggatatctttttcattaaacaaatgtttgttgttaaccttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaat 156  Q
    ||||||| | || ||||| |||||| ||| | |||  |||||||||||||||| | || |||| | |||| |||||||||| |||||||| |||||||||    
T  39062359 gtgggatttgttattcatcaaacaagtgtattttgcaaaccttttaatcacaaacattcattttatttttgccacatgtcatacatctatgacttgaaat 39062260  T
Q  157 tgggtaaattgaggaaatctaaatggagctaagat 191  Q
     || ||||||||  ||| | ||||||||| |||||    
T  39062259 gggataaattgaacaaaccaaaatggagcaaagat 39062225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 10148553 - 10148628
Alignment:
Q  68 ttttcattaaacaaatgtttgttgttaaccttttaatcacaacccttgatttaactttttccacatgtcacacatc 143  Q
    |||||||||||||| ||||| ||   ||| |||||||| ||||||||||||| | |||| ||||||||||||||||    
T  10148553 ttttcattaaacaagtgttttttccaaactttttaatctcaacccttgattttatttttaccacatgtcacacatc 10148628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 1233799 - 1233713
Alignment:
Q  98 ttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggag 184  Q
    ||||||||  |||| || |||| | |||| |||| ||||||||||| || |||| |||| |||||||||||||||| ||||||||||    
T  1233799 ttttaatcttaaccatttattttatttttgccacgtgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggag 1233713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 6205388 - 6205493
Alignment:
Q  93 taaccttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatg 192  Q
    ||||||||||||| || |||||||  |   |||| |||| |||||||||| | |  ||| |||| |||||||||||||||  ||||||||||| ||||||    
T  6205388 taaccttttaatctcagcccttgaaattgtttttgccacgtgtcacacatttgtttcttaaaatggggtaaattgaggaagcctaaatggagcaaagatg 6205487  T
Q  193 gactct 198  Q
    ||||||    
T  6205488 gactct 6205493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 38823294 - 38823220
Alignment:
Q  123 tttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
    |||||||||||||||||||||| ||| || |||  | |||||| ||| |||| |||||||||| |||||| ||||    
T  38823294 tttttccacatgtcacacatctgtaaattcaaaaggagtaaatggagcaaatataaatggagcaaagatgaactc 38823220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 7338767 - 7338867
Alignment:
Q  97 cttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggact 196  Q
    ||||||||||||||| ||||||| | ||||||||||||| |||||||||| ||||||||| | ||||||||||||||  |||||||||| ||||||||||    
T  7338767 cttttaatcacaaccattgattttattttttccacatgttacacatctatgacttgaaatggagtaaattgaggaaacataaatggagcaaagatggact 7338866  T
Q  197 c 197  Q
    |    
T  7338867 c 7338867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 7338104 - 7338012
Alignment:
Q  103 atcacaaccctt-gatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatgga 194  Q
    ||||||||| || ||||| | ||||||||||||||||| |||||| ||||||||| || ||||||||| |||| |||||||||| ||||||||    
T  7338104 atcacaaccattagattttattttttccacatgtcacatatctatgacttgaaatgggataaattgagaaaatataaatggagcaaagatgga 7338012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 197
Target Start/End: Complemental strand, 1764661 - 1764516
Alignment:
Q  51 atgcgcgtgggatatctttttcattaaacaaatgtttgttgttaaccttttaatcacaacccttgatttaactttttccacatgtcacacatctataact 150  Q
    ||||||||||||| ||||| |||||| | | |||||| |||| |||| ||||||| ||||| ||||||  | |||| |||||||||| ||||| || |      
T  1764661 atgcgcgtgggatttctttctcattaga-atatgttttttgtcaaccatttaatctcaacctttgattatatttttgccacatgtcatacatccatgatg 1764563  T
Q  151 tgaaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
      |||| |||||||||||| |||  |||||||||| |||||||||||    
T  1764562 ataaatagggtaaattgagcaaacttaaatggagcaaagatggactc 1764516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 2367513 - 2367611
Alignment:
Q  99 tttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
    |||||||||  || ||||||| | ||| | ||||||||||||||| || ||| ||||| ||||||||||||||||   ||||||||| |||||| ||||    
T  2367513 tttaatcacggccattgattttattttatacacatgtcacacatccattactagaaatggggtaaattgaggaaagtgaaatggagcaaagatgcactc 2367611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 30143015 - 30142951
Alignment:
Q  130 acatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatgga 194  Q
    |||||||||||||||||   |||||||||||||||| ||| | | ||||||||||| | ||||||    
T  30143015 acatgtcacacatctatggtttgaaattgggtaaatagagcacacctaaatggagcaatgatgga 30142951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 30157654 - 30157590
Alignment:
Q  130 acatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatgga 194  Q
    |||||||||||||||||  |||||||||| |||||| ||| | | ||||||||||| | ||||||    
T  30157654 acatgtcacacatctatggcttgaaattgagtaaatagagcacacctaaatggagcaatgatgga 30157590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 120172 - 120072
Alignment:
Q  98 ttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
    |||||||| ||||| || |||| | |||||||| ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |||||| ||||    
T  120172 ttttaatctcaaccatttattttattttttccatatgtcacgcatctataacttgaaatggggtaaattgaggaaagctaaatggagcaaagatgaactc 120073  T
Q  198 t 198  Q
    |    
T  120072 t 120072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 2639787 - 2639717
Alignment:
Q  122 ctttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatg 192  Q
    ||||||| |||||| |||||||||||||||||||| |||||||||||| |||  |||||||||| ||||||    
T  2639787 ctttttctacatgttacacatctataacttgaaatggggtaaattgagcaaaaataaatggagcaaagatg 2639717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 40720332 - 40720401
Alignment:
Q  123 tttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatg 192  Q
    ||||||||| ||||||||||||||||||| |||| ||  ||||||||||||  |||||||||| ||||||    
T  40720332 tttttccacgtgtcacacatctataacttaaaataggaaaaattgaggaaaggtaaatggagcaaagatg 40720401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 43379450 - 43379501
Alignment:
Q  94 aaccttttaatcacaacccttgatttaactttttccacatgtcacacatcta 145  Q
    |||||||||||| ||||||||| ||| | |||| ||||||||||||||||||    
T  43379450 aaccttttaatcccaacccttgcttttatttttgccacatgtcacacatcta 43379501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 126265 - 126314
Alignment:
Q  135 tcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagc 185  Q
    ||||||||||||||||| |||| |||||||||||| ||| |||||||||||    
T  126265 tcacacatctataacttaaaat-gggtaaattgagaaaacctaaatggagc 126314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 42774005 - 42773971
Alignment:
Q  130 acatgtcacacatctataacttgaaattgggtaaa 164  Q
    ||||||||||||||||| |||||||||||||||||    
T  42774005 acatgtcacacatctatgacttgaaattgggtaaa 42773971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 1217895 - 1217843
Alignment:
Q  94 aaccttttaatcacaacccttgatttaactttttccacatgtcacacatctat 146  Q
    ||||||||||||  |||||||||||| || ||| ||| |||||||||||||||    
T  1217895 aaccttttaatccaaacccttgatttcacatttgccaaatgtcacacatctat 1217843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 24484883 - 24484784
Alignment:
Q  97 cttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggact 196  Q
    ||||||||| || || ||| ||| | |||||||||||||||||||||||||||||||||| || ||||||||||||   |||||||||| ||||||||||    
T  24484883 cttttaatctcagccattggttttattttttccacatgtcacacatctataacttgaaataggataaattgaggaatcttaaatggagcaaagatggact 24484784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 39310496 - 39310396
Alignment:
Q  97 cttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggact 196  Q
    ||||||||| || || ||| ||| | ||||||||||||||| |||||||||||||||||| || ||||||||||||   |||||||||| ||||||||||    
T  39310496 cttttaatctcagccattggttttattttttccacatgtcatacatctataacttgaaatgggataaattgaggaatcttaaatggagcaaagatggact 39310397  T
Q  197 c 197  Q
    |    
T  39310396 c 39310396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 198
Target Start/End: Original strand, 39311310 - 39311441
Alignment:
Q  67 tttttcattaaacaaatgtttgttgttaaccttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaatt 166  Q
    ||||||||||||||| || || ||   || ||||||||| || |  ||||||| | |||||||||||||||||||||||| |||| |||| |||||||||    
T  39311310 tttttcattaaacaattgcttttttcaaagcttttaatctcagcaattgattttattttttccacatgtcacacatctatgacttaaaatggggtaaatt 39311409  T
Q  167 gaggaaatc-taaatggagctaagatggactct 198  Q
    || |||||| |||||||||| ||||||||||||    
T  39311410 ga-gaaatcttaaatggagcaaagatggactct 39311441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 44516885 - 44516785
Alignment:
Q  98 ttttaatcacaacccttgatttaacttttt-ccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggact 196  Q
    |||||||||||||  ||||||| | ||||| ||||||||||||||||||| |||| ||||  |||||||| |||||| ||||||||| | ||||| ||||    
T  44516885 ttttaatcacaactattgattttatttttttccacatgtcacacatctatcacttaaaatgaggtaaattaaggaaacctaaatggatcaaagatagact 44516786  T
Q  197 c 197  Q
    |    
T  44516785 c 44516785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 21857532 - 21857601
Alignment:
Q  123 tttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatg 192  Q
    ||||||||| ||||| ||||||||||||| |||| || |||||||||||||  |||||||||| ||||||    
T  21857532 tttttccacgtgtcagacatctataacttaaaatgggataaattgaggaaaggtaaatggagcaaagatg 21857601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 21913395 - 21913464
Alignment:
Q  123 tttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatg 192  Q
    ||||||||| ||||| ||||||||||||| |||| || |||||||||||||  |||||||||| ||||||    
T  21913395 tttttccacgtgtcagacatctataacttaaaatgggataaattgaggaaaggtaaatggagcaaagatg 21913464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 197
Target Start/End: Original strand, 32159461 - 32159590
Alignment:
Q  68 ttttcattaaacaaatgtttgttgttaaccttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattg 167  Q
    |||||||||||||| ||||| |    ||||| ||||||   ||| ||||||| | ||||||||||||||||||||| |     |||||| ||||||||||    
T  32159461 ttttcattaaacaagtgtttttctcaaacctcttaatcctgacctttgattttattttttccacatgtcacacatccaaggaatgaaatggggtaaattg 32159560  T
Q  168 aggaaatctaaatggagctaagatggactc 197  Q
    |||||| ||||||||||| |||||| ||||    
T  32159561 aggaaacctaaatggagcaaagatgcactc 32159590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 3464916 - 3464985
Alignment:
Q  123 tttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatg 192  Q
    ||||||||| ||||||||||||||||||| |||| |   ||||||||||||  |||||||||| ||||||    
T  3464916 tttttccacgtgtcacacatctataacttaaaatggaaaaaattgaggaaaggtaaatggagcaaagatg 3464985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 14087730 - 14087669
Alignment:
Q  123 tttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggag 184  Q
    ||||||||| |||| ||||| ||||| ||||||| ||||||||||||||||  |||||||||    
T  14087730 tttttccacgtgtcgcacatttataaattgaaatggggtaaattgaggaaagttaaatggag 14087669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 31414816 - 31414916
Alignment:
Q  97 cttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggact 196  Q
    ||||||||| ||||||||  ||| || ||| |||||||||||| ||| ||||  |||||  |  |||||||||||||  |||||||||| ||||||||||    
T  31414816 cttttaatctcaacccttctttttacatttgccacatgtcacatatcaataaagtgaaaaggaataaattgaggaaacttaaatggagcaaagatggact 31414915  T
Q  197 c 197  Q
    |    
T  31414916 c 31414916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 36385812 - 36385886
Alignment:
Q  123 tttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
    ||||| ||||||||||||||| || ||| ||||| |||||||||||| |||   ||||||||| |||||| ||||    
T  36385812 tttttacacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 36385886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 36386029 - 36386103
Alignment:
Q  123 tttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
    ||||| ||||||||||||||| || ||| ||||| |||||||||||| |||   ||||||||| |||||| ||||    
T  36386029 tttttacacatgtcacacatccatgactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 36386103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 53371515 - 53371470
Alignment:
Q  212 ttttaatctcaaccattgaattctgtttcgccacgtgtcacgcatc 257  Q
    |||||||||||||| |||| || || ||||||||||||||||||||    
T  53371515 ttttaatctcaaccgttgatttttgattcgccacgtgtcacgcatc 53371470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 5469960 - 5470032
Alignment:
Q  125 tttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
    ||||||||||||||||||| ||||    |||| || ||||||||| |||  |||||||||| |||||||||||    
T  5469960 tttccacatgtcacacatccataatggtaaatgggataaattgagcaaacttaaatggagcaaagatggactc 5470032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 23011436 - 23011480
Alignment:
Q  212 ttttaatctcaaccattgaattctgtttcgccacgtgtcacgcat 256  Q
    |||||||||||||| |||| || || |||||||||||||||||||    
T  23011436 ttttaatctcaaccgttgatttttgattcgccacgtgtcacgcat 23011480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 35903789 - 35903690
Alignment:
Q  99 tttaatcacaacccttgatttaactttttcc--acatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggact 196  Q
    ||||||||||||| ||||||| | |||||||  |||||||||||||| |||||||||||| ||||||||||||  || ||||||||||| ||||| ||||    
T  35903789 tttaatcacaaccattgattttattttttccccacatgtcacacatccataacttgaaatggggtaaattgagagaacctaaatggagcaaagatagact 35903690  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 37886754 - 37886654
Alignment:
Q  97 cttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggact 196  Q
    ||||||||| |||||||||| || || ||| |||||||||||||||| ||||  |||||  |  ||||||||||||| ||||||| ||| || |||||||    
T  37886754 cttttaatcccaacccttgactttacatttgccacatgtcacacatcaataaagtgaaaaggaataaattgaggaaacctaaatgaagcaaaaatggact 37886655  T
Q  197 c 197  Q
    |    
T  37886654 c 37886654  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 29642499 - 29642400
Alignment:
Q  97 cttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggact 196  Q
    |||||||||||| || ||||||  | |||||||||||||||||||||| | |  |||||| || ||||||||||||   |||||||||| || |||||||    
T  29642499 cttttaatcacatccattgattctattttttccacatgtcacacatctttgatatgaaatgggataaattgaggaagcttaaatggagcaaaaatggact 29642400  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 44456747 - 44456691
Alignment:
Q  96 ccttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttg 152  Q
    ||||||||||||| || ||||||| | |||||||||||||| |||||||| ||||||    
T  44456747 ccttttaatcacagccattgattttattttttccacatgtctcacatctaaaacttg 44456691  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 29643299 - 29643345
Alignment:
Q  151 tgaaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
    ||||||||||||||||||||||  ||||||||||| | |||||||||    
T  29643299 tgaaattgggtaaattgaggaagcctaaatggagcaacgatggactc 29643345  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 40810265 - 40810349
Alignment:
Q  108 aacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatg 192  Q
    |||| ||||||| | |||| |||  ||||||||||| || |||| |||| || |||||||||||||  |||||||||| ||||||    
T  40810265 aaccattgattttatttttgccatgtgtcacacatccatgacttaaaatgggataaattgaggaaacttaaatggagcaaagatg 40810349  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 44312393 - 44312437
Alignment:
Q  153 aaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
    |||| ||||||||||||||||  |||||||||| |||||||||||    
T  44312393 aaatggggtaaattgaggaaacataaatggagcaaagatggactc 44312437  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 34260214 - 34260116
Alignment:
Q  99 tttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
    ||||||||||||| || | || | ||||| ||||||||||||||| || ||||||||| ||||||||||||||||   ||||||||| |||||||||||    
T  34260214 tttaatcacaaccattcaatttaatttttacacatgtcacacatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 34260116  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 34262186 - 34262255
Alignment:
Q  129 cacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggactct 198  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||||   ||||||||| |||||| |||||    
T  34262186 cacatgtcacacatccataacttaaaatggggtaaattgaggaaaggaaaatggagcaaagatgaactct 34262255  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 6829959 - 6830057
Alignment:
Q  99 tttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
    |||||||||| || |||||||   ||| | ||||||||||||||| || ||| ||||| ||||||||||||||||   ||||||||| |||||| ||||    
T  6829959 tttaatcacagccattgattttcttttatacacatgtcacacatccattactagaaatggggtaaattgaggaaagtgaaatggagcaaagatgcactc 6830057  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 18066283 - 18066357
Alignment:
Q  123 tttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggactct 198  Q
    |||| ||| |||||| |||||||| |||| |||| |||||||||||||||| | ||||||||| |||||| |||||    
T  18066283 ttttgccaaatgtcagacatctatgacttaaaat-gggtaaattgaggaaagcaaaatggagcaaagatgaactct 18066357  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 6826656 - 6826558
Alignment:
Q  99 tttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
    |||||||||| || |||||||   ||| | ||||||||||||||| || | | ||||| ||||||||||||||||   ||||||||| |||||| ||||    
T  6826656 tttaatcacagccattgattttcttttatacacatgtcacacatccattattagaaatggggtaaattgaggaaagtgaaatggagcaaagatgcactc 6826558  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 184
Target Start/End: Complemental strand, 3163618 - 3163502
Alignment:
Q  67 tttttcattaaacaaatgtttgttgttaaccttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaatt 166  Q
    |||||||||||||||||  || | || |||||||| |||  |||||||| ||| | ||||  |||||||| |||||||||||  |||||  ||||||||     
T  3163618 tttttcattaaacaaatacttttcgt-aaccttttgatcctaacccttggttttatttttgacacatgtcgcacatctataaactgaaaaggggtaaatg 3163520  T
Q  167 gaggaaatctaaatggag 184  Q
    ||||| | ||||||||||    
T  3163519 gaggatagctaaatggag 3163502  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 35752466 - 35752338
Alignment:
Q  56 cgtgggatatctttttcattaaacaaatgtttgttgttaaccttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaa 155  Q
    |||||||| | || ||||| |||||||||||| ||   |||||||||||||||||| ||||||| | |||| |||||||||| |||||||| | ||||||    
T  35752466 cgtgggatttgttattcatcaaacaaatgtttttttcaaaccttttaatcacaaccattgattttatttttgccacatgtcatacatctatga-ttgaaa 35752368  T
Q  156 ttgggtaaattgaggaaatctaaatggagc 185  Q
    | || ||||||||| ||| | |||||||||    
T  35752367 tgggataaattgagcaaaccaaaatggagc 35752338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 5956537 - 5956439
Alignment:
Q  99 tttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
    |||||||||| || ||||||| | ||| | ||||||||||||||| || ||| ||||| ||||||||||||||||   ||||||||| |||||| ||||    
T  5956537 tttaatcacagccattgattttattttatacacatgtcacacatccattactagaaatggggtaaattgaggaaagtgaaatggagcaaagatgcactc 5956439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 35753033 - 35753137
Alignment:
Q  97 cttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattggg----taaattgaggaaatctaaatggagctaagatg 192  Q
    |||||||||||| || ||||||| | |||| |||||||||| |||||||| || |||||| |||    ||||||||| |||  |||||||||| ||||||    
T  35753033 cttttaatcacagccattgattttatttttgccacatgtcatacatctatgacgtgaaatggggtaaataaattgagtaaacataaatggagcaaagatg 35753132  T
Q  193 gactc 197  Q
    |||||    
T  35753133 gactc 35753137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 43844892 - 43844793
Alignment:
Q  99 tttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggactct 198  Q
    |||||||||| || ||||||| | ||||| ||||||||||||||| ||  ||| |||| |||||||||||| |||   ||||||||| |||||| |||||    
T  43844892 tttaatcacagccattgattttattttttacacatgtcacacatccatgtctttaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactct 43844793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 5960993 - 5961061
Alignment:
Q  129 cacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggactc 197  Q
    ||||||||||||||| || ||| ||||| ||||||||||||||||   ||||||||| |||||| ||||    
T  5960993 cacatgtcacacatccattactagaaatggggtaaattgaggaaagtgaaatggagcaaagatgcactc 5961061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 39021037 - 39020961
Alignment:
Q  94 aaccttttaatcacaacccttgatttaacttttt-ccacatgtcacacatctataacttgaaattgggtaaattgag 169  Q
    |||| ||||||||| ||| ||||||| | ||||| |||||||||||||||| ||  |||||||| ||||||||||||    
T  39021037 aaccatttaatcacgaccattgattttatttttttccacatgtcacacatccatgtcttgaaatggggtaaattgag 39020961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 10270927 - 10270872
Alignment:
Q  130 acatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagc 185  Q
    ||||||||||||||||| |||| ||||||||||||| ||| | | |||||||||||    
T  10270927 acatgtcacacatctatgacttaaaattgggtaaatagagcacacctaaatggagc 10270872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 43845858 - 43845949
Alignment:
Q  99 tttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaaga 190  Q
    ||||||||||||| ||||||| | |||||||| ||||| |||||| ||  ||| |||| |||||||||||| |||   ||||||||| ||||    
T  43845858 tttaatcacaaccattgattttattttttccatatgtcgcacatccatgtcttcaaatggggtaaattgagcaaagtgaaatggagcaaaga 43845949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 192
Target Start/End: Complemental strand, 4126791 - 4126698
Alignment:
Q  99 tttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatg 192  Q
    ||||||||||||| ||||||| | | ||| |||||||||| |||| ||  ||| |||| |||||||||||| |||   ||||||||| ||||||    
T  4126791 tttaatcacaaccattgattttattatttacacatgtcacgcatccatgtcttcaaatggggtaaattgagcaaagtgaaatggagcaaagatg 4126698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 193
Target Start/End: Original strand, 13210 - 13306
Alignment:
Q  97 cttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatgg 193  Q
    ||||||||| |||||||||| || |  ||| |||||||||||||||| ||||  |||||  |  ||||||||||||| ||||||||||| |||||||    
T  13210 cttttaatcccaacccttgactttaaatttgccacatgtcacacatcaataaagtgaaaaggaataaattgaggaaacctaaatggagcaaagatgg 13306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 12617 - 12517
Alignment:
Q  97 cttttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaagatggact 196  Q
    ||||||||| ||||||||| ||| || ||| |||||||||||||| | ||||  |||||  |  |||||||||||||  ||||| |||| |||||| |||    
T  12617 cttttaatcccaacccttgtttttacatttgccacatgtcacacaacaataaagtgaaaaggaataaattgaggaaacttaaatagagcaaagatgaact 12518  T
Q  197 c 197  Q
    |    
T  12517 c 12517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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