View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18828_high_4 (Length: 247)
Name: NF18828_high_4
Description: NF18828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18828_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 16286328 - 16286540
Alignment:
| Q |
21 |
aactttaattagttttgtaaaatatacaactctacaaatcctttaa-nnnnnnnnataggaactctac--atctttgtagtcaaacttcaactat--tgc |
115 |
Q |
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| T |
16286328 |
aactttaattagttttgtaaaatatacaactctacaaatcctttaatttttttttataggaactctacaaatctttgtagtcaaacttcaactattgtgc |
16286427 |
T |
|
| Q |
116 |
agc--ttgtgcttcatctttaaataaatgaatctacataaatgg-gnnnnnnnntagaacaaatcaataaaatttagttataacgaaagaacaatcggtc |
212 |
Q |
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||| |||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||| ||||||| ||| |
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| T |
16286428 |
agcctttgtgcttcatctt----taaatgaatctacataactggaaaaataaaatagaacaaatcaataaaatttagttaaaacgaaataacaatc-gtc |
16286522 |
T |
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| Q |
213 |
gaagaacaacccacatat |
230 |
Q |
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||||| ||||||||||| |
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| T |
16286523 |
gaagagtaacccacatat |
16286540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 50167181 - 50167384
Alignment:
| Q |
21 |
aactttaattagttttgtaaaatatacaactctacaaatcctttaannnnnnnnataggaactctac--atctttgtagtcaaacttcaactattgcag- |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| ||| ||||||| ||||||||||| |||||| |
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| T |
50167181 |
aactttaattagttttgtaaaatatacaactctacaaatcctttga-tttttttagaggaactctacaaatccttgtagttaaacttcaactcttgcagt |
50167279 |
T |
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| Q |
118 |
cttgtgcttcatctttaaataaatgaatctacataaatgggnnnnnnnntagaacaaatcaataaaatttagttataacgaaagaacaatcggtcgaaga |
217 |
Q |
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| T |
50167280 |
cttgagcttcatctt----taaatgaatctacataactg----aaaaaatagaacaaatcaataaaatttacttaaaccgaaagaccaatcggtcgaaga |
50167371 |
T |
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| Q |
218 |
acaacccacatat |
230 |
Q |
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| || ||||||| |
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| T |
50167372 |
gcgacacacatat |
50167384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 38617510 - 38617574
Alignment:
| Q |
167 |
tagaacaaatcaataaaatttagttataacgaaagaacaatcggtcgaagaacaacccacatatt |
231 |
Q |
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|||||||||||||||||||||||| | ||| ||| || ||| ||||||||||||||| ||||||| |
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| T |
38617510 |
tagaacaaatcaataaaatttagtcaaaaccaaaaaataattggtcgaagaacaaccaacatatt |
38617574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 43381997 - 43381954
Alignment:
| Q |
21 |
aactttaattagttttgtaaaatatacaactctacaaatccttt |
64 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
43381997 |
aacttttattagttttgtaaaatattgaactctacaaatccttt |
43381954 |
T |
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