View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18828_high_7 (Length: 213)

Name: NF18828_high_7
Description: NF18828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18828_high_7
NF18828_high_7
[»] chr5 (23 HSPs)
chr5 (1-213)||(30399467-30399679)
chr5 (1-213)||(29852701-29852913)
chr5 (1-213)||(17418658-17418870)
chr5 (1-213)||(30713923-30714135)
chr5 (83-213)||(30749115-30749245)
chr5 (84-213)||(29871659-29871788)
chr5 (84-213)||(30242873-30243002)
chr5 (84-213)||(30482877-30483006)
chr5 (1-213)||(30059759-30059971)
chr5 (88-213)||(30339026-30339151)
chr5 (1-213)||(30205915-30206127)
chr5 (88-213)||(30435299-30435424)
chr5 (1-56)||(30474774-30474829)
chr5 (83-213)||(30677669-30677799)
chr5 (1-50)||(30243024-30243073)
chr5 (1-49)||(30749045-30749093)
chr5 (8-82)||(4381005-4381079)
chr5 (1-50)||(30482806-30482855)
chr5 (1-49)||(30677821-30677869)
chr5 (1-50)||(29871588-29871637)
chr5 (1-50)||(30339177-30339226)
chr5 (1-34)||(30522299-30522332)
chr5 (1-34)||(30562639-30562672)
[»] chr7 (1 HSPs)
chr7 (1-213)||(26706734-26706946)
[»] chr4 (2 HSPs)
chr4 (1-213)||(20297092-20297304)
chr4 (117-213)||(52351472-52351568)
[»] chr1 (1 HSPs)
chr1 (1-51)||(7582382-7582432)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 2e-69; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 30399467 - 30399679
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcactaatagttgggggcttggtaaatccatcatcgctttcccatgacaagcataatt 100  Q
    ||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |||||||||||||  | |||||||||||||||||||||||    
T  30399467 ttgagatttgagtgaggttgaagcacttcgagtacttgctgagcactaatagttgggggattggtaaatccatagttgctttcccatgacaagcataatt 30399566  T
Q  101 catgaaggnnnnnnnnacccagcaaattagccgcttgaacttcagataaactgccaacatcttttaagccttctatacgcagttttccgccgaggtttag 200  Q
    ||||||||        ||||| ||||| |||||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||    
T  30399567 catgaaggtcttttttacccatcaaatcagccgcttgagcttgagataaactgccaaaatcttttaagccttcgatacgcagttttccaccgaggtttag 30399666  T
Q  201 atcacgtaactct 213  Q
    |||||||||||||    
T  30399667 atcacgtaactct 30399679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 29852701 - 29852913
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcactaatagttgggggcttggtaaatccatcatcgctttcccatgacaagcataatt 100  Q
    ||||||||||||||||||||||||  ||| |||||||||||| ||  ||||||||||||||  ||||||||||||| ||||||||||||||| |||||||    
T  29852701 ttgagatttgagtgaggttgaagctcttcgagtacttgctcatcatgaatagttgggggctcagtaaatccatcattgctttcccatgacaaacataatt 29852800  T
Q  101 catgaaggnnnnnnnnacccagcaaattagccgcttgaacttcagataaactgccaacatcttttaagccttctatacgcagttttccgccgaggtttag 200  Q
    |||||| |        ||||| |||||||||||||| | |||||||||||||||| ||||||||||||||||  |||| ||| ||||| || ||||||||    
T  29852801 catgaatgtctgttttacccatcaaattagccgcttcagcttcagataaactgcccacatcttttaagcctttgatactcagctttccaccaaggtttag 29852900  T
Q  201 atcacgtaactct 213  Q
    ||||| |||||||    
T  29852901 atcacataactct 29852913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 17418870 - 17418658
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcactaatagttgggggcttggtaaatccatcatcgctttcccatgacaagcataatt 100  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||| | | |||| ||| || ||| |||| | ||||| ||| |||||||||||||    
T  17418870 ttgagatttgagtgaggttgaagcacttcaagtagttgctcagcactaacaataggggtctttgtcaattcatcgttgcttttccacgacaagcataatt 17418771  T
Q  101 catgaaggnnnnnnnnacccagcaaattagccgcttgaacttcagataaactgccaacatcttttaagccttctatacgcagttttccgccgaggtttag 200  Q
    | || |||        ||| | ||| |||||  ||||| ||||||||||| | |||||||||||||||||||  |||| || |||||| |||||||||||    
T  17418770 cttggaggtcttttttacctatcaacttagcttcttgagcttcagataaattaccaacatcttttaagcctttgatactcaattttccaccgaggtttag 17418671  T
Q  201 atcacgtaactct 213  Q
    ||||| |||||||    
T  17418670 atcacctaactct 17418658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 30714135 - 30713923
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcactaatagttgggggcttggtaaatccatcatcgctttcccatgacaagcataatt 100  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||||| |   |||| ||| | || ||| |  | |  || |||||||||| ||||||    
T  30714135 ttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaacaacaggggtctttggaattccttgtttgtctttccatgacaagtataatt 30714036  T
Q  101 catgaaggnnnnnnnnacccagcaaattagccgcttgaacttcagataaactgccaacatcttttaagccttctatacgcagttttccgccgaggtttag 200  Q
    ||||||||        ||||| |||||||||||||| | ||||| |||||||||||||||  ||||| ||||  |||| ||||||||| |||||||||||    
T  30714035 catgaaggtcttttttacccatcaaattagccgcttcagcttcaaataaactgccaacattgtttaatcctttgatactcagttttccaccgaggtttag 30713936  T
Q  201 atcacgtaactct 213  Q
    |||||||||||||    
T  30713935 atcacgtaactct 30713923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 83 - 213
Target Start/End: Original strand, 30749115 - 30749245
Alignment:
Q  83 cccatgacaagcataattcatgaaggnnnnnnnnacccagcaaattagccgcttgaacttcagataaactgccaacatcttttaagccttctatacgcag 182  Q
    ||||||||||||||||||||||||||        ||||| |||||||||||||| | |||||||||||||||||||||  ||||| ||||  |||| |||    
T  30749115 cccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatcctttgatactcag 30749214  T
Q  183 ttttccgccgaggtttagatcacgtaactct 213  Q
    |||||| ||||||||||||||||||||||||    
T  30749215 ttttccaccgaggtttagatcacgtaactct 30749245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 29871659 - 29871788
Alignment:
Q  84 ccatgacaagcataattcatgaaggnnnnnnnnacccagcaaattagccgcttgaacttcagataaactgccaacatcttttaagccttctatacgcagt 183  Q
    ||||||||||||||||| |||||||        ||||| |||||||||||||| | |||||||||||||||||||||  ||||| ||||| |||| ||||    
T  29871659 ccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatccttcgatactcagt 29871758  T
Q  184 tttccgccgaggtttagatcacgtaactct 213  Q
    ||||| ||||| ||||||||||||||||||    
T  29871759 tttccaccgagttttagatcacgtaactct 29871788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 84 - 213
Target Start/End: Complemental strand, 30243002 - 30242873
Alignment:
Q  84 ccatgacaagcataattcatgaaggnnnnnnnnacccagcaaattagccgcttgaacttcagataaactgccaacatcttttaagccttctatacgcagt 183  Q
    |||||||||||||||||||||||||        ||||| |||||||||||||| | |||||||||||||||||||||  ||||||  ||  |||| ||||    
T  30243002 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaagtgttggatactcagt 30242903  T
Q  184 tttccgccgaggtttagatcacgtaactct 213  Q
    ||||| ||||||||||||||||||||||||    
T  30242902 tttccaccgaggtttagatcacgtaactct 30242873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 30482877 - 30483006
Alignment:
Q  84 ccatgacaagcataattcatgaaggnnnnnnnnacccagcaaattagccgcttgaacttcagataaactgccaacatcttttaagccttctatacgcagt 183  Q
    |||||||||||||||||||||||||        ||||| |||||||||||||| | |||||||||| ||||||||||  ||||| ||||  ||| |||||    
T  30482877 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacattgtttaatccttggatatgcagt 30482976  T
Q  184 tttccgccgaggtttagatcacgtaactct 213  Q
    ||||| ||||||||||||||||||||||||    
T  30482977 tttccaccgaggtttagatcacgtaactct 30483006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 30059759 - 30059971
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcactaatagttgggggcttggtaaatccatcatcgctttcccatgacaagcataatt 100  Q
    ||||||||||||||||||||||| | |||||||||||||||| |||||| |   |||  ||| | || ||| |  | |  || |||||||||| ||||||    
T  30059759 ttgagatttgagtgaggttgaagaacttcaagtacttgctcaacactaacaacagggttctttggaattccttgtttgtctttccatgacaagtataatt 30059858  T
Q  101 catgaaggnnnnnnnnacccagcaaattagccgcttgaacttcagataaactgccaacatcttttaagccttctatacgcagttttccgccgaggtttag 200  Q
    ||||||||        ||||| |||||||||||||| | ||||| |||| ||||||||||  ||||| ||||  ||| |||||||||| |||||||||||    
T  30059859 catgaaggtcttttttacccatcaaattagccgcttcagcttcaaataacctgccaacattgtttaatccttggatatgcagttttccaccgaggtttag 30059958  T
Q  201 atcacgtaactct 213  Q
    |||||||||||||    
T  30059959 atcacgtaactct 30059971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 88 - 213
Target Start/End: Complemental strand, 30339151 - 30339026
Alignment:
Q  88 gacaagcataattcatgaaggnnnnnnnnacccagcaaattagccgcttgaacttcagataaactgccaacatcttttaagccttctatacgcagttttc 187  Q
    ||||||||||||| |||||||        ||||| |||||||||||||| | |||||||||| ||||||||||  ||||| ||||  ||| |||||||||    
T  30339151 gacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacattgtttaatccttggatatgcagttttc 30339052  T
Q  188 cgccgaggtttagatcacgtaactct 213  Q
    | ||||||||||||||||||||||||    
T  30339051 caccgaggtttagatcacgtaactct 30339026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 30205915 - 30206127
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcactaatagttgggggcttggtaaatccatcatcgctttcccatgacaagcataatt 100  Q
    ||||||||||||||||||||||||| ||||| || |||||||  ||||||||| |||| ||| |||||||| |||| |||   ||| || || |||||||    
T  30205915 ttgagatttgagtgaggttgaagcacttcaaatagttgctcaaaactaatagtaggggtcttcgtaaatccgtcattgctggtccacgaaaaacataatt 30206014  T
Q  101 catgaaggnnnnnnnnacccagcaaattagccgcttgaacttcagataaactgccaacatcttttaagccttctatacgcagttttccgccgaggtttag 200  Q
    | || |||        ||||| |||||| || |||||| ||||||||||||| | |||||| ||||| ||||  ||||  |||||||| || ||||||||    
T  30206015 cctggaggtcttttttacccatcaaattggctgcttgagcttcagataaactacaaacatcatttaaacctttgatacttagttttcctcccaggtttag 30206114  T
Q  201 atcacgtaactct 213  Q
    |||  ||||||||    
T  30206115 atcgtgtaactct 30206127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 30435299 - 30435424
Alignment:
Q  88 gacaagcataattcatgaaggnnnnnnnnacccagcaaattagccgcttgaacttcagataaactgccaacatcttttaagccttctatacgcagttttc 187  Q
    |||||||||||||||||||||        ||||  |||||||||||||| | ||||||||||||| |||||||  ||||| ||||  |||| ||||||||    
T  30435299 gacaagcataattcatgaaggtcttttttacccttcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgatactcagttttc 30435398  T
Q  188 cgccgaggtttagatcacgtaactct 213  Q
    | ||||||||||||||| ||||||||    
T  30435399 caccgaggtttagatcatgtaactct 30435424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 30474774 - 30474829
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcactaatagttgg 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  30474774 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcagtagtagttgg 30474829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 83 - 213
Target Start/End: Complemental strand, 30677799 - 30677669
Alignment:
Q  83 cccatgacaagcataattcatgaaggnnnnnnnnacccagcaaattagccgcttgaacttcagataaactgccaacatcttttaagccttctatacgcag 182  Q
    ||||||||||||||||||||||||||        | ||| ||| |||||||||| | |||||||||||||  ||||||  ||||| ||||  |||| |||    
T  30677799 cccatgacaagcataattcatgaaggtcttttttatccatcaatttagccgcttcagcttcagataaactagcaacattgtttaatcctttgatactcag 30677700  T
Q  183 ttttccgccgaggtttagatcacgtaactct 213  Q
    |||||| | ||||||||||||||||||||||    
T  30677699 ttttccactgaggtttagatcacgtaactct 30677669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30243073 - 30243024
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcactaat 50  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30243073 ttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaat 30243024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30749045 - 30749093
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcactaa 49  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30749045 ttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaa 30749093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 4381005 - 4381079
Alignment:
Q  8 ttgagtgaggttgaagcatttcaagtacttgctcagcactaatagttgggggcttggtaaatccatcatcgcttt 82  Q
    |||||||||||||||||  ||| | |||||||||||  |||||||||||||||||||||||| |||||| |||||    
T  4381005 ttgagtgaggttgaagctcttcgaatacttgctcagatctaatagttgggggcttggtaaatacatcattgcttt 4381079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 30482806 - 30482855
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcactaat 50  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  30482806 ttgagatttgagtgaggttgaagctcttcaagtacttgctcagcactaat 30482855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30677869 - 30677821
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcactaa 49  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  30677869 ttgagatttgagtgaggtttaagcacttcaagtacttgctcagcactaa 30677821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 29871588 - 29871637
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcactaat 50  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||||||    
T  29871588 ttgagatttgagtgaggttgaagctcttcgagtacttgctcagcactaat 29871637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30339226 - 30339177
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcactaat 50  Q
    ||||||||||||||||||||||||  ||| || |||||||||||||||||    
T  30339226 ttgagatttgagtgaggttgaagctcttcgagcacttgctcagcactaat 30339177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30522332 - 30522299
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagta 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  30522332 ttgagatttgagtgaggttgaagcacttcaagta 30522299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30562672 - 30562639
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagta 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  30562672 ttgagatttgagtgaggttgaagcacttcaagta 30562639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 26706734 - 26706946
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcactaatagttgggggcttggtaaatccatcatcgctttcccatgacaagcataatt 100  Q
    ||||||||||||||||||||||||| ||  ||||  |||||| ||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||    
T  26706734 ttgagatttgagtgaggttgaagcactttgagtagctgctcaacactaatagttggtggcttggtaaatccatcattgttttcccatgacaagcataatt 26706833  T
Q  101 catgaaggnnnnnnnnacccagcaaattagccgcttgaacttcagataaactgccaacatcttttaagccttctatacgcagttttccgccgaggtttag 200  Q
      |  |||         |||| |||||| ||  ||||| |||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||    
T  26706834 tttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacatcttttaagccttcgatactcagttttccaccgaggtttag 26706933  T
Q  201 atcacgtaactct 213  Q
    |||||||||||||    
T  26706934 atcacgtaactct 26706946  T

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Target: chr4 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 20297304 - 20297092
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcactaatagttgggggcttggtaaatccatcatcgctttcccatgacaagcataatt 100  Q
    ||||||||||| ||||||||||||| ||| ||||||| ||||||||| | |||||| ||||||||||||  ||||| ||||||||| |||||||||||||    
T  20297304 ttgagatttgactgaggttgaagcacttcgagtactttctcagcacttacagttggtggcttggtaaatttatcattgctttcccaagacaagcataatt 20297205  T
Q  101 catgaaggnnnnnnnnacccagcaaattagccgcttgaacttcagataaactgccaacatcttttaagccttctatacgcagttttccgccgaggtttag 200  Q
    ||||||||        ||||| |||||| ||  ||||| ||||||||| |||||||||||||||||||||||  |||| ||||||||| || || |||||    
T  20297204 catgaaggtcttttttacccatcaaattggcttcttgagcttcagatatactgccaacatcttttaagcctttgatactcagttttccaccaagttttag 20297105  T
Q  201 atcacgtaactct 213  Q
    |||||||||||||    
T  20297104 atcacgtaactct 20297092  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 52351472 - 52351568
Alignment:
Q  117 acccagcaaattagccgcttgaacttcagataaactgccaacatcttttaagccttctatacgcagttttccgccgaggtttagatcacgtaactct 213  Q
    ||||| |||||| ||| || |||| |||||||| |||| ||||| || || |||||| || | |||||||||  | || ||||||||||||||||||    
T  52351472 acccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcacgtaactct 52351568  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7582432 - 7582382
Alignment:
Q  1 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcactaata 51  Q
    |||||||||| |||||||||||||| |||||||||||| ||  ||||||||    
T  7582432 ttgagatttgtgtgaggttgaagcacttcaagtacttgatcgtcactaata 7582382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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